missing eval script and links broken

[AnaValero]

Hi,

First of all, thanks for creating this promissing tool.
I've been following the github tutorial for DeepEventMine until I got the following error when running:
$ sh run.sh eval id gold dev sp
Error: "python: can't open file 'eval/scripts/eval-ev-id.py': [Errno 2] No such file or directory"
I found out that this folder only contains two scripts: eval-ev-cg.py and eval-ev-pc.py
Is it not uploaded yet or should I create it somehow?

Also, after running the steps "sh run.sh offset id gold test" and ".. gold dev", a message pops out that I don't really understand:
" submit this file: experiments/id/predict-gold-dev/ev-last/online-eval/id-dev-2021_10_06_18_25_54.tar.gz". (Same for id test)
I guess that these compressed files are to be sent through the links that appear in the github page: "ID Test", or "ID dev" n my case. However, these links are broken.

Could you bypass this latter step of submitting any created file to a webserver to enable a compact package for its fully ussage in house?

Thanks a lot"
I'm looking forward to use this tool with my data.
Ana

[AnaValero]

(Continuation)

• Broken links:
  I updated some broken links in the download.sh script, although I could not updated other ones:
  New for id: http://nactem.ac.uk/GENIA/current/Shared-tasks/BioNLP-ST-2011-ID
  New for ge11: https://github.com/ninjin/simsem/raw/master/data/corpora/bionlp_2011_st
  Not found for cg nor ge13

• Missing script:

• Could not find for eval/scripts/eval-ev-id.py and had to create it manually from eval-ev-cg.py
  So I had to manually add the "given_types", "entity_types" and "event_types" by extracting that info from the annotated files from the experiments, and from page: (https://sites.google.com/site/bionlpst/bionlp-shared-task-2011/infectious-diseases-task-id)

Later, running it:
sh run.sh eval id gold dev p
I get:

• Frequent error1:
  <_io.TextIOWrapper name='' mode='w' encoding='utf-8'> Failed to read experiments/id/predict-gold-dev/ev-last/ev-orig-a2/PMC1804205-00-TIAB.a2 : ERROR: duplicate ID E1 in experiments/id/predict-gold-dev/ev-last/ev-orig-a2/PMC1804205-00-TIAB.a2

• Frequent error2:
  <_io.TextIOWrapper name='' mode='w' encoding='utf-8'> ##############################################################################
  PMID not in gold: PMC2651894-02-Results-03
  PMID not in annotation: PMC2651894-02-Results-03

• Error3:
  <_io.TextIOWrapper name='' mode='w' encoding='utf-8'> # NOTE: SKIPPING experiments/id/predict-gold-dev/ev-last/ev-orig-a2/PMC1804205-02-Results-01.a2, READ FAILED: RESULTS WILL NOT BE VALID FOR THE FULL DATASET!
  <_io.TextIOWrapper name='' mode='w' encoding='utf-8'> ##############################################################################

• Evaluation table for only 6/46 documents

I hope somebody had these issues and found out how to solve them...