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thesis.tex
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% thesis.tex: Primary TeX control file for thesis.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[11pt, oneside]{mnthesis}
\usepackage{epsfig} % Allows the inclusion of eps files
\usepackage{epic} % Enhanced picture mode
\usepackage{eepic} % Extensions for epic
\usepackage{units} % SI unit typesetting
\usepackage{url} % URL handling
\usepackage{longtable} % Tables that continue onto multiple pages
\usepackage{mathrsfs} % Support for \mathscr script
\usepackage{multirow} % Span rows in tables
\usepackage{bigstrut} % Space struts in tables up and down
\usepackage{amssymb} % AMS math symbols and helpers
\usepackage{graphicx} % Enhanced graphics support
\usepackage{setspace} % Adjust spacing in captions, single by default
\usepackage{xspace} % Automatically adjusting space after macros
\usepackage{amsmath} % \text, and other math formatting options
\usepackage{siunitx} % \num{} formatting and SI unit formatting
\usepackage{booktabs} % Enhanced tables with \toprule, etc.
\usepackage{hyperref} % Add clickable links to other parts of the document
\usepackage[noabbrev]{cleveref} % Automatically determine \cref type
% Configure the siunitx package
\sisetup{
group-separator = {,}, % Use , to separate groups of digits, like 12,345
list-final-separator = {, and } % Always use the serial comma in \SIlist
}
% Configure the cleveref package
\newcommand{\creflastconjunction}{, and } % Always use the serial comma
\input{my_definitions}
\linespread{1.3}
% Compile only the chapters listed here
\includeonly{
preliminaries/title,
chapters/intro,
chapters/science,
chapters/experiment,
chapters/simulation,
chapters/reconstruction,
chapters/data_set,
chapters/event_selection,
chapters/analysis,
chapters/conclusion,
chapters/app_glossary,
}
\begin{document}
\bibliographystyle{hunsrt} % style of bibliography
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Title and other sections that come before the body of the document
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\include{preliminaries/title}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Now lets include the body of the document...
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\include{chapters/intro}
%Base Chapters
\include{chapters/science}
\include{chapters/experiment}
%Software Chapters
\include{chapters/simulation}
\include{chapters/reconstruction}
%Analysis Chapters
\include{chapters/data_set}
\include{chapters/event_selection}
\include{chapters/analysis}
%Conclusion
\include{chapters/conclusion}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Bibliography
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\bibliography{thesis}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Appendices
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\appendix
\include{chapters/app_glossary}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% End the Document
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\end{document}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%