From 0f826f43532e82d9d322549a98be4687eb7f2e20 Mon Sep 17 00:00:00 2001 From: Yunuuuu Date: Thu, 9 Jan 2025 12:36:08 +0800 Subject: [PATCH] docs update --- README.Rmd | 6 +----- README.md | 6 +----- 2 files changed, 2 insertions(+), 10 deletions(-) diff --git a/README.Rmd b/README.Rmd index b2756eda..97455a3d 100644 --- a/README.Rmd +++ b/README.Rmd @@ -75,8 +75,6 @@ remotes::install_github("Yunuuuu/ggalign") ## Compare with other similar tools -Basic Layout support: - | Layout Options | `ggalign` | `ComplexHeatmap` | `marsilea` | `ggtree` | | --------------------------------- | --------------------------------------------------- | --------------------------------- | ------------------------ | --------------------------------------------------- | | **Language** | R | R | Python | R | @@ -92,8 +90,6 @@ Basic Layout support: ------------------------------------------------------------------------------- -Specific Function: - | Functions | `ggalign` | `ComplexHeatmap` | `marsilea` | `ggtree` | | -------------------------------------------- | ----------------------------------------------------- | ------------------------------------------------------------------------- | ----------------- | ----------------------------------- | | **Data input** | Various, and can be easily extended | fixed | fixed | Various, and can be easily extended | @@ -104,7 +100,7 @@ Specific Function: | **Legends Creation** | Automatic | Limited automatic, requires manual add | Manual | Automatic | | **Legends Position** | Anywhere, can be controlled for a single plot | Four sides, can only be placed on one side at a time | ? | Anywhere | | **Scientific Color Palettes** | Many | Limited | Limited | Many | -| **Dendrogram** | Tree from Both `hclust` or `ape` | hclust only (Cannot be used in Stack Layout) | hclust only | Tree from Both `hclust` or `ape` | +| **Dendrogram** | Tree from Both `hclust` or `ape` | `hclust` only (Cannot be used in Stack Layout) | `hclust` only | Tree from Both `hclust` or `ape` | | **Tanglegram** | ✅ | ❌ | ❌ | ❌ | | **3D Heatmap** | ✅ | ✅ | ❌ | ❌ | | **Oncoplot** | ✅ | ✅ | ✅ | ❌ | diff --git a/README.md b/README.md index a2e54886..a1fb6b98 100644 --- a/README.md +++ b/README.md @@ -68,8 +68,6 @@ remotes::install_github("Yunuuuu/ggalign") ## Compare with other similar tools -Basic Layout support: - | Layout Options | `ggalign` | `ComplexHeatmap` | `marsilea` | `ggtree` | |-----------------------------------|-----------------------------------------------------|-----------------------------------|--------------------------|-----------------------------------------------------| | **Language** | R | R | Python | R | @@ -85,8 +83,6 @@ Basic Layout support: ------------------------------------------------------------------------ -Specific Function: - | Functions | `ggalign` | `ComplexHeatmap` | `marsilea` | `ggtree` | |----------------------------------------------|-------------------------------------------------------|---------------------------------------------------------------------------|-------------------|-------------------------------------| | **Data input** | Various, and can be easily extended | fixed | fixed | Various, and can be easily extended | @@ -97,7 +93,7 @@ Specific Function: | **Legends Creation** | Automatic | Limited automatic, requires manual add | Manual | Automatic | | **Legends Position** | Anywhere, can be controlled for a single plot | Four sides, can only be placed on one side at a time | ? | Anywhere | | **Scientific Color Palettes** | Many | Limited | Limited | Many | -| **Dendrogram** | Tree from Both `hclust` or `ape` | hclust only (Cannot be used in Stack Layout) | hclust only | Tree from Both `hclust` or `ape` | +| **Dendrogram** | Tree from Both `hclust` or `ape` | `hclust` only (Cannot be used in Stack Layout) | `hclust` only | Tree from Both `hclust` or `ape` | | **Tanglegram** | ✅ | ❌ | ❌ | ❌ | | **3D Heatmap** | ✅ | ✅ | ❌ | ❌ | | **Oncoplot** | ✅ | ✅ | ✅ | ❌ |