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Consider increasing max.overlaps in cnetplot() #32

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yeroslaviz opened this issue Oct 24, 2024 · 0 comments

yeroslaviz commented Oct 24, 2024 •

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I'm trying to plot my data using the cnetplot() function, but keep getting this warning in my RStudio session, even though I set the value to Inf

options(ggrepel.max.overlaps = Inf)
cnetplot(ego.BP, color.params = list(foldChange = genes), 
    showCategory = go_of_interest$Name, # layout = 'circle',
    cex.params = list(gene_node = 0.5, gene_label = 0.5)
    )

Is there a way to label only the categories, but not the genes?
Or to show only specific genes, e.g. those with a FC ≥ 2?

Screenshot 2024-10-24 at 10 33 57 AM

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