diff --git a/README.md b/README.md index d62ab3e..e1995de 100644 --- a/README.md +++ b/README.md @@ -21,15 +21,11 @@ See more details in the [benchmarks](#benchmarks) section. ## Examples -**Note** I added spaces after _ symbols because [Github math formatting is broken](https://github.com/github/markup/issues/1575). +**Note** I added spaces after _ symbols and removed \, because [Github math formatting is broken](https://github.com/github/markup/issues/1575). ![Example 0](data/examples/0.png) -**Detected Text** The potential $V_{i}$ of cell $\mathcal{C}_ {j}$ centred at position $\mathbf{r}_ {i}$ is related to the surface charge densities $\sigma_ {j}$ of cells $\mathcal{E}_ {j}$ $j\in[1,N]$ through the superposition principle as: - -$$V_ {i}\,=\,\sum_ {j=0}^{N}\,\frac{\sigma_ {j}}{4\pi\varepsilon_ {0}}\,\int_{\mathcal{E}_ {j}}\frac{1}{\left|\mathbf{r}_ {i}-\mathbf{r}^{\prime}\right|}\,\mathrm{d}^{2}\mathbf{r}^{\prime}\,=\,\sum_{j=0}^{N}\,Q_ {ij}\,\sigma_{j},$$ - -where the integral over the surface of cell $\mathcal{C}_ {j}$ only depends on $\mathcal{C}{j}$ shape and on the relative position of the target point $\mathbf{r}_ {i}$ with respect to $\mathcal{C}_ {j}$ location, as $\sigma_ {j}$ is assumed constant over the whole surface of cell $\mathcal{C}_ {j}$. +**Detected Text** The potential $V_ i$ of cell $\mathcal{C}_ i$ centred at position $\mathbf{r}_ i$ is related to the surface charge densities $\sigma_ j$ of cells $\mathcal{C}_ j$ $j\in[1,N]$ through the superposition principle as: $$V_ i = \sum_ {j=0}^{N} \frac{\sigma_ j}{4\pi\varepsilon_ 0} \int_ {\mathcal{C}_ j} \frac{1}{|\mathbf{r}_ i-\mathbf{r}'|} \mathrm{d}^2\mathbf{r}' = \sum_{j=0}^{N} Q_ {ij} \sigma_ j,$$ where the integral over the surface of cell $\mathcal{C}_ j$ only depends on $\mathcal{C}_ j$ shape and on the relative position of the target point $\mathbf{r}_ i$ with respect to $\mathcal{C}_ j$ location, as $\sigma_ j$ is assumed constant over the whole surface of cell $\mathcal{C}_ j$. | Image | OCR Markdown | |----------------------------|---------------------------| @@ -39,7 +35,7 @@ where the integral over the surface of cell $\mathcal{C}_ {j}$ only depends on $ # Installation -You'll need python 3.10+ and PyTorch. You may need to install the CPU version of torch first if you're not using a Mac or a GPU machine. See [here](https://pytorch.org/get-started/locally/) for more details. +You'll need python 3.9+ and PyTorch. You may need to install the CPU version of torch first if you're not using a Mac or a GPU machine. See [here](https://pytorch.org/get-started/locally/) for more details. Install with: @@ -80,6 +76,7 @@ texify /path/to/folder_or_file --max 8 --json_path results.json - `--max` is how many images in the folder to convert at most. Omit this to convert all images in the folder. - `--json_path` is an optional path to a json file where the results will be saved. If you omit this, the results will be saved to `data/results.json`. +- `--katex_compatible` will make the output more compatible with KaTeX. ## Import and run @@ -97,6 +94,8 @@ img = Image.open("test.png") # Your image name here results = batch_inference([img], model, processor) ``` +See `texify/output.py:replace_katex_invalid` if you want to make the output more compatible with KaTeX. + # Manual install If you want to develop texify, you can install it manually: diff --git a/data/examples/0.md b/data/examples/0.md index a2155d0..3142f17 100644 --- a/data/examples/0.md +++ b/data/examples/0.md @@ -1,5 +1 @@ -The potential $V_{i}$ of cell $\mathcal{C}_ {j}$ centred at position $\mathbf{r}_ {i}$ is related to the surface charge densities $\sigma_ {j}$ of cells $\mathcal{E}_ {j}$ $j\in[1,N]$ through the superposition principle as: - -$$V_ {i}\,=\,\sum_ {j=0}^{N}\,\frac{\sigma_ {j}}{4\pi\varepsilon_ {0}}\,\int_{\mathcal{E}_ {j}}\frac{1}{\left|\mathbf{r}_ {i}-\mathbf{r}^{\prime}\right|}\,\mathrm{d}^{2}\mathbf{r}^{\prime}\,=\,\sum_{j=0}^{N}\,Q_ {ij}\,\sigma_{j},$$ - -where the integral over the surface of cell $\mathcal{C}_ {j}$ only depends on $\mathcal{C}{j}$ shape and on the relative position of the target point $\mathbf{r}_ {i}$ with respect to $\mathcal{C}_ {j}$ location, as $\sigma_ {j}$ is assumed constant over the whole surface of cell $\mathcal{C}_ {j}$. \ No newline at end of file +The potential $V_ i$ of cell $\mathcal{C}_ i$ centred at position $\mathbf{r}_ i$ is related to the surface charge densities $\sigma_ j$ of cells $\mathcal{C}_ j$ $j\in[1,N]$ through the superposition principle as: $$V_ i = \sum_ {j=0}^{N} \frac{\sigma_ j}{4\pi\varepsilon_ 0} \int_ {\mathcal{C}_ j} \frac{1}{|\mathbf{r}_ i-\mathbf{r}'|} \mathrm{d}^2\mathbf{r}' = \sum_{j=0}^{N} Q_ {ij} \sigma_ j,$$ where the integral over the surface of cell $\mathcal{C}_ j$ only depends on $\mathcal{C}_ j$ shape and on the relative position of the target point $\mathbf{r}_ i$ with respect to $\mathcal{C}_ j$ location, as $\sigma_ j$ is assumed constant over the whole surface of cell $\mathcal{C}_ j$. \ No newline at end of file diff --git a/ocr_app.py b/ocr_app.py index 09b7778..6acc634 100644 --- a/ocr_app.py +++ b/ocr_app.py @@ -9,20 +9,13 @@ from texify.inference import batch_inference from texify.model.model import load_model from texify.model.processor import load_processor -from texify.settings import settings -import subprocess -import re +from texify.output import replace_katex_invalid from PIL import Image -MAX_WIDTH = 1000 +MAX_WIDTH = 800 +MAX_HEIGHT = 1000 -def replace_katex_invalid(string): - # KaTeX cannot render all LaTeX, so we need to replace some things - string = re.sub(r'\\tag\{.*?\}', '', string) - string = re.sub(r'\\Big\{(.*?)\}|\\big\{(.*?)\}', r'\1\2', string) - return string - @st.cache_resource() def load_model_cached(): return load_model() @@ -63,6 +56,12 @@ def get_uploaded_image(in_file): return Image.open(in_file).convert("RGB") +def resize_image(pil_image): + if pil_image is None: + return + pil_image.thumbnail((MAX_WIDTH, MAX_HEIGHT), Image.Resampling.LANCZOS) + + @st.cache_data() def page_count(pdf_file): doc = open_pdf(pdf_file) @@ -76,12 +75,8 @@ def get_canvas_hash(pil_image): @st.cache_data() def get_image_size(pil_image): if pil_image is None: - return 800, 600 + return MAX_HEIGHT, MAX_WIDTH height, width = pil_image.height, pil_image.width - if width > MAX_WIDTH: - scale = MAX_WIDTH / width - height = int(height * scale) - width = MAX_WIDTH return height, width @@ -115,6 +110,9 @@ def get_image_size(pil_image): pil_image = get_uploaded_image(in_file) whole_image = st.sidebar.button("OCR image") +# Resize to max bounds +resize_image(pil_image) + temperature = st.sidebar.slider("Generation temperature:", min_value=0.0, max_value=1.0, value=0.0, step=0.05) canvas_hash = get_canvas_hash(pil_image) if pil_image else "canvas" diff --git a/ocr_image.py b/ocr_image.py index 3ad2361..5230d65 100644 --- a/ocr_image.py +++ b/ocr_image.py @@ -5,21 +5,25 @@ from texify.model.model import load_model from texify.model.processor import load_processor from PIL import Image + +from texify.output import replace_katex_invalid from texify.settings import settings from texify.util import is_valid_image import json -def inference_single_image(image_path, json_path, model, processor): +def inference_single_image(image_path, json_path, model, processor, katex_compatible=False): image = Image.open(image_path) text = batch_inference([image], model, processor) + if katex_compatible: + text = [replace_katex_invalid(t) for t in text] write_data = [{"image_path": image_path, "text": text[0]}] with open(json_path, "w+") as f: json_repr = json.dumps(write_data, indent=4) f.write(json_repr) -def inference_image_dir(image_dir, json_path, model, processor, max=None): +def inference_image_dir(image_dir, json_path, model, processor, max=None, katex_compatible=False): image_paths = [os.path.join(image_dir, image_name) for image_name in os.listdir(image_dir)] image_paths = [ip for ip in image_paths if is_valid_image(ip)] if max: @@ -31,6 +35,8 @@ def inference_image_dir(image_dir, json_path, model, processor, max=None): images = [Image.open(image_path) for image_path in batch] text = batch_inference(images, model, processor) for image_path, t in zip(batch, text): + if katex_compatible: + t = replace_katex_invalid(t) write_data.append({"image_path": image_path, "text": t}) with open(json_path, "w+") as f: @@ -43,6 +49,7 @@ def main(): parser.add_argument("image", type=str, help="Path to image or folder of images to OCR.") parser.add_argument("--max", type=int, help="Maximum number of images to OCR if a folder is passes.", default=None) parser.add_argument("--json_path", type=str, help="Path to JSON file to save results to.", default=os.path.join(settings.DATA_DIR, "results.json")) + parser.add_argument("--katex_compatible", action="store_true", help="Make output KaTeX compatible.", default=False) args = parser.parse_args() image_path = args.image @@ -53,9 +60,9 @@ def main(): os.makedirs(os.path.dirname(json_path), exist_ok=True) if os.path.isfile(image_path): - inference_single_image(image_path, json_path, model, processor) + inference_single_image(image_path, json_path, model, processor, args.katex_compatible) else: - inference_image_dir(image_path, json_path, model, processor, args.max) + inference_image_dir(image_path, json_path, model, processor, args.max, args.katex_compatible) print(f"Wrote results to {json_path}") diff --git a/poetry.lock b/poetry.lock index 1b65c29..d4db47b 100644 --- a/poetry.lock +++ b/poetry.lock @@ -299,21 +299,22 @@ files = [ [[package]] name = "attrs" -version = "23.1.0" +version = "23.2.0" description = "Classes Without Boilerplate" optional = false python-versions = ">=3.7" files = [ - {file = "attrs-23.1.0-py3-none-any.whl", hash = "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04"}, - {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"}, + {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"}, + {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"}, ] [package.extras] cov = ["attrs[tests]", "coverage[toml] (>=5.3)"] -dev = ["attrs[docs,tests]", "pre-commit"] +dev = ["attrs[tests]", "pre-commit"] docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"] tests = ["attrs[tests-no-zope]", "zope-interface"] -tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] +tests-mypy = ["mypy (>=1.6)", "pytest-mypy-plugins"] +tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist[psutil]"] [[package]] name = "babel" @@ -588,13 +589,13 @@ files = [ [[package]] name = "comm" -version = "0.2.0" +version = "0.2.1" description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc." optional = false python-versions = ">=3.8" files = [ - 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{file = "jsonschema_specifications-2023.11.2-py3-none-any.whl", hash = "sha256:e74ba7c0a65e8cb49dc26837d6cfe576557084a8b423ed16a420984228104f93"}, - {file = "jsonschema_specifications-2023.11.2.tar.gz", hash = "sha256:9472fc4fea474cd74bea4a2b190daeccb5a9e4db2ea80efcf7a1b582fc9a81b8"}, + {file = "jsonschema_specifications-2023.12.1-py3-none-any.whl", hash = "sha256:87e4fdf3a94858b8a2ba2778d9ba57d8a9cafca7c7489c46ba0d30a8bc6a9c3c"}, + {file = "jsonschema_specifications-2023.12.1.tar.gz", hash = "sha256:48a76787b3e70f5ed53f1160d2b81f586e4ca6d1548c5de7085d1682674764cc"}, ] [package.dependencies] @@ -1297,6 +1299,7 @@ files = [ ] [package.dependencies] +importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""} jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" python-dateutil = ">=2.8.2" pyzmq = ">=23.0" @@ -1333,13 +1336,13 @@ test = ["flaky", "pexpect", "pytest"] [[package]] name = "jupyter-core" -version = "5.5.1" +version = "5.6.1" description = "Jupyter core package. A base package on which Jupyter projects rely." optional = false python-versions = ">=3.8" files = [ - {file = "jupyter_core-5.5.1-py3-none-any.whl", hash = "sha256:220dfb00c45f0d780ce132bb7976b58263f81a3ada6e90a9b6823785a424f739"}, - {file = "jupyter_core-5.5.1.tar.gz", hash = "sha256:1553311a97ccd12936037f36b9ab4d6ae8ceea6ad2d5c90d94a909e752178e40"}, + {file = "jupyter_core-5.6.1-py3-none-any.whl", hash = "sha256:3d16aec2e1ec84b69f7794e49c32830c1d950ad149526aec954c100047c5f3a7"}, + {file = "jupyter_core-5.6.1.tar.gz", hash = "sha256:5139be639404f7f80f3db6f687f47b8a8ec97286b4fa063c984024720e7224dc"}, ] [package.dependencies] @@ -1388,6 +1391,7 @@ files = [ ] [package.dependencies] +importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""} jupyter-server = ">=1.1.2" [[package]] @@ -1428,13 +1432,13 @@ test = ["flaky", "ipykernel", "pre-commit", "pytest (>=7.0)", "pytest-console-sc [[package]] name = "jupyter-server-terminals" -version = "0.5.0" +version = "0.5.1" description = "A Jupyter Server Extension Providing Terminals." optional = false python-versions = ">=3.8" files = [ - {file = "jupyter_server_terminals-0.5.0-py3-none-any.whl", hash = "sha256:2fc0692c883bfd891f4fba0c4b4a684a37234b0ba472f2e97ed0a3888f46e1e4"}, - {file = "jupyter_server_terminals-0.5.0.tar.gz", hash = "sha256:ebcd68c9afbf98a480a533e6f3266354336e645536953b7abcc7bdeebc0154a3"}, + {file = "jupyter_server_terminals-0.5.1-py3-none-any.whl", hash = "sha256:5e63e947ddd97bb2832db5ef837a258d9ccd4192cd608c1270850ad947ae5dd7"}, + {file = "jupyter_server_terminals-0.5.1.tar.gz", hash = "sha256:16d3be9cf48be6a1f943f3a6c93c033be259cf4779184c66421709cf63dccfea"}, ] [package.dependencies] @@ -1447,17 +1451,18 @@ test = ["jupyter-server (>=2.0.0)", "pytest (>=7.0)", "pytest-jupyter[server] (> [[package]] name = "jupyterlab" -version = "4.0.9" +version = "4.0.10" description = "JupyterLab computational environment" optional = false python-versions = ">=3.8" files = [ - {file = 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@@ -15,7 +15,7 @@ include = [ ] [tool.poetry.dependencies] -python = ">=3.10,<4.0" +python = ">=3.9,<4.0,!=3.9.7" streamlit = "^1.29.0" transformers = "^4.36.2" torch = "^2.1.2" @@ -29,6 +29,7 @@ watchdog = "^3.0.0" ftfy = "^6.1.3" tabulate = "^0.9.0" streamlit-drawable-canvas-jsretry = "^0.9.3" +huggingface-hub = "0.19.4" [tool.poetry.group.dev.dependencies] jupyter = "^1.0.0" diff --git a/texify/output.py b/texify/output.py index d5f8409..b51e1b7 100644 --- a/texify/output.py +++ b/texify/output.py @@ -2,10 +2,42 @@ from ftfy import fix_text +def remove_labels(text): + pattern = r'\\label\{[^}]*\}' + text = re.sub(pattern, '', text) + + ref_pattern = r'\\ref\{[^}]*\}' + text = re.sub(ref_pattern, '', text) + + pageref_pattern = r'\\pageref\{[^}]*\}' + text = re.sub(pageref_pattern, '', text) + return text + + +def remove_inner_dollars(text): + def replace_dollar(match): + # Replace single $ with nothing, keep $$ intact + math_block = match.group(1) + return '$$' + math_block.replace('$', '') + '$$' + + # Regex to find $$...$$ blocks, including new lines + pattern = r'\$\$(.*?)\$\$' + + return re.sub(pattern, replace_dollar, text, flags=re.DOTALL) + + def replace_katex_invalid(string): - return re.sub(r'\\tag\{.*?\}', '', string) + # KaTeX cannot render all LaTeX, so we need to replace some things + string = re.sub(r'\\tag\{.*?\}', '', string) + string = re.sub(r'\\(?:Bigg?|bigg?)\{(.*?)\}', r'\1', string) + string = re.sub(r'\\quad\\mbox\{(.*?)\}', r'\1', string) + string = re.sub(r'\\mbox\{(.*?)\}', r'\1', string) + string = remove_inner_dollars(string) + return string def postprocess(text): text = fix_text(text) + # Remove latex labels and references + text = remove_labels(text) return text \ No newline at end of file