From 050957da37efce8e6ae3762566d6d98b78005a03 Mon Sep 17 00:00:00 2001 From: "David (Andre) Nickerson" Date: Thu, 4 Apr 2024 09:34:28 +1300 Subject: [PATCH 1/2] Missing ' to end a block --- site_creator/templates/db/editors.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/site_creator/templates/db/editors.yaml b/site_creator/templates/db/editors.yaml index 69a6b2e..9b3f321 100644 --- a/site_creator/templates/db/editors.yaml +++ b/site_creator/templates/db/editors.yaml @@ -14,7 +14,7 @@ editors: terms: - '2024-2026' image: 'ai_bio.jpg' - text: 'Weiwei Ai (PhD in Electrical and Electronic Engineering) is a Research Fellow at the Auckland Bioengineering Institute, New Zealand. Her research areas include multiscale modeling, machine learning applications in computational physiology, and modeling software design. Employing standards such as CellML, SEDML, and semantic annotation, she automates model processes from construction, integration, and reduction to system analysis. She is also interested in incorporating prior knowledge and structured standards into machine learning techniques to integrate knowledge graphs from research literature, biological ontologies, annotated models, and simulation results, along with experimental data. + text: 'Weiwei Ai (PhD in Electrical and Electronic Engineering) is a Research Fellow at the Auckland Bioengineering Institute, New Zealand. Her research areas include multiscale modeling, machine learning applications in computational physiology, and modeling software design. Employing standards such as CellML, SEDML, and semantic annotation, she automates model processes from construction, integration, and reduction to system analysis. She is also interested in incorporating prior knowledge and structured standards into machine learning techniques to integrate knowledge graphs from research literature, biological ontologies, annotated models, and simulation results, along with experimental data.' - name: 'Matthias König' active: True From ce03bac4da46064295ff8555c63088638f0c672f Mon Sep 17 00:00:00 2001 From: SED-ML Bot Date: Wed, 3 Apr 2024 20:38:37 +0000 Subject: [PATCH 2/2] Updated compiled files for website [skip ci] --- about.html | 28 +++++++++++++++++++--------- urns.html | 5 ----- 2 files changed, 19 insertions(+), 14 deletions(-) diff --git a/about.html b/about.html index 66f0c71..a8935ad 100644 --- a/about.html +++ b/about.html @@ -155,19 +155,19 @@

SED-ML Editors

- Tomas Helikar + Weiwei Ai
-

Tomas Helikar (2021-2023)

-

Dr. Helikar is an Associate Professor in the Department of Biochemistry at the University of Nebraska - Lincoln. His research expertise is in computational systems biology, technology development, and STEM education.

+

Weiwei Ai (2024-2026)

+

Weiwei Ai (PhD in Electrical and Electronic Engineering) is a Research Fellow at the Auckland Bioengineering Institute, New Zealand. Her research areas include multiscale modeling, machine learning applications in computational physiology, and modeling software design. Employing standards such as CellML, SEDML, and semantic annotation, she automates model processes from construction, integration, and reduction to system analysis. She is also interested in incorporating prior knowledge and structured standards into machine learning techniques to integrate knowledge graphs from research literature, biological ontologies, annotated models, and simulation results, along with experimental data.

- Jonathan Karr + Matthias König
-

Jonathan Karr (2021-2023)

-

Jonathan Karr is an Assistant Professor in the Department of Genetics and Genomic Sciences at the Icahn School of Medicine at Mount Sinai. The goal of Jonathan's research is to develop comprehensive whole-cell models of all of the biochemical activity inside cells to enable a predictive foundation for medicine and bioengineering analogous to the Newtonian foundation for mechanical engineering.

+

Matthias König (2024-2026; 2020-2022; 2017-2019)

+

Matthias König (PhD. in Biophysics) leads an junior research group for Systems Biology and Systems Medicine of the liver at the Humboldt University Berlin. His research areas include computational modeling, data science, development of bioinformatics methods and machine learning based on biological, medical and clinical data. He has been actively involved in the development of SBML, SED-ML and software supporting these standards: Lead-developer of cy3sbml and sbmlutils; contributor of the SBML simulation software libroadrunner and tellurium.

@@ -260,12 +260,22 @@

Past members of the SED-ML editorial board

- Matthias König -
Matthias König (2020-2022; 2017-2019)
-
Matthias König (PhD. in Biophysics) leads an junior research group for Systems Biology and Systems Medicine of the liver at the Humboldt University Berlin. His research areas include computational modeling, data science, development of bioinformatics methods and machine learning based on biological, medical and clinical data. He has been actively involved in the development of SBML, SED-ML and software supporting these standards: Lead-developer of cy3sbml and sbmlutils; contributor of the SBML simulation software libroadrunner and tellurium.
+
Tomas Helikar (2021-2023)
+
Dr. Helikar is an Associate Professor in the Department of Biochemistry at the University of Nebraska - Lincoln. His research expertise is in computational systems biology, technology development, and STEM education.
+ + + + + Jonathan Karr + + +
Jonathan Karr (2021-2023)
+
Jonathan Karr is an Assistant Professor in the Department of Genetics and Genomic Sciences at the Icahn School of Medicine at Mount Sinai. The goal of Jonathan's research is to develop comprehensive whole-cell models of all of the biochemical activity inside cells to enable a predictive foundation for medicine and bioengineering analogous to the Newtonian foundation for mechanical engineering.
diff --git a/urns.html b/urns.html index ef6bb63..aeefa5d 100644 --- a/urns.html +++ b/urns.html @@ -199,11 +199,6 @@

Language URNs

urn:sedml:language:cellml.2_0 https://www.cellml.org/specifications/cellml_2.0 - - COPASI (generic) - urn:sedml:language:copasi - https://copasi.org/Support/Technical_Documentation/File_Format/ - GENESIS (generic) urn:sedml:language:genesis