knit-rmd.yaml

name: Knit Rmd Files

on:
  push:
    branches:
      - main
  pull_request:
  workflow_dispatch:

jobs:
  knit:
    runs-on: ubuntu-latest
    permissions:
      contents: write
      pull-requests: write

    steps:
      - name: Checkout repository
        uses: actions/checkout@v4

      - name: Set up R
        uses: r-lib/actions/setup-r@v2

      - name: Install dependencies
        run: |
          Rscript -e 'install.packages(c("rmarkdown", "knitr"))'

      - name: Find and knit Rmd files
        run: |
          Rscript -e '
            rmd_files <- list.files(pattern = "\\.Rmd$", recursive = TRUE)
            for (file in rmd_files) {
              rmarkdown::render(file)
            }
          '

      - name: Commit changes
        run: |
          git config --global user.name "github-actions[bot]"
          git config --global user.email "github-actions[bot]@users.noreply.github.com"
          git add -A
          git commit -m "Knit Rmd files" || echo "No changes to commit"

      - name: Push changes
        uses: ad-m/github-push-action@v0.8.0
        with:
          branch: ${{ github.head_ref }}