diff --git a/.Rbuildignore b/.Rbuildignore index 3b61984..7cad094 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -8,3 +8,4 @@ dev_history.R $run_dev.* ^.here$ ^LICENSE\.md$ +^\.github$ diff --git a/.github/.gitignore b/.github/.gitignore new file mode 100644 index 0000000..2d19fc7 --- /dev/null +++ b/.github/.gitignore @@ -0,0 +1 @@ +*.html diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml new file mode 100644 index 0000000..a5ee068 --- /dev/null +++ b/.github/workflows/R-CMD-check.yaml @@ -0,0 +1,34 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + branches: [main, master] + +name: R-CMD-check.yaml + +permissions: read-all + +jobs: + R-CMD-check: + runs-on: ubuntu-latest + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + R_KEEP_PKG_SOURCE: yes + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/setup-r@v2 + with: + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::rcmdcheck + needs: check + + - uses: r-lib/actions/check-r-package@v2 + with: + upload-snapshots: true + build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' diff --git a/README.md b/README.md index a0a07ee..acc2391 100644 --- a/README.md +++ b/README.md @@ -2,6 +2,7 @@ [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental) +[![R-CMD-check](https://github.com/UCLH-Foundry/omop-data-catalogue/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/UCLH-Foundry/omop-data-catalogue/actions/workflows/R-CMD-check.yaml) The goal of calypso is to provide a summary of OMOP data and display it in a public data catalogue