2023-06-19 June release

PHIPO June 2023 release

This release contains the following changes since the previous release (23 November 2022).

New terms

• normal growth on tolnaftate (PHIPO:0001287) (#391)
• resistance to tolnaftate (PHIPO:0001288) (#392)
• sensitive to tolnaftate (PHIPO:0001289) (#392)
• normal growth on azoxystrobin (PHIPO:0001290) (#393)
• resistance to fenpicoxamid (PHIPO:0001291) (#390)
• sensitive to fenpicoxamid (PHIPO:0001292) (#394)
• normal growth on fenpicoxamid (PHIPO:0001293) (#395)

Full Changelog: v2022-11-23...v2023-06-19

2022-11-23 November release

PHIPO November 2022 release

This release contains the following changes since the previous release (29 July 2021).

New terms

• presence of pathogen sexual spores within host (PHIPO:0001271) (#367)
• stunted growth (PHIPO:0001272) (#341)
• abnormal host morphology during phagocytosis of pathogen (PHIPO:0001273) (#370)
• host immune system phagocytosis of pathogen present (PHIPO:0001274) (#371)
• presence of viable pathogen sexual spores within host (PHIPO:0001275) (#372)
• increased number of host galls during pathogen invasion (PHIPO:0001276) (#375)
• presence of pathogen induced host DNA synthesis (PHIPO:0001277) (#373)
• decreased pathogen induced host DNA synthesis (PHIPO:0001278) (#373)
• abolished peptidase activity (PHIPO:0001279) (#379)
• increased pathogen induced host DNA synthesis (PHIPO:0001280) (#380)
• presence of host protein phosphorylation with pathogen (PHIPO:0001281) (#376)
• absence of host protein phosphorylation with pathogen (PHIPO:0001282) (#376)
• increased host protein phosphorylation with pathogen (PHIPO:0001283) (#376)
• decreased host protein phosphorylation with pathogen (PHIPO:0001284) (#376)
• increased level of host defense-related RNA involved in a pathogen interaction (PHIPO:0001285) (#382)
• presence of pathogen protein host DNA interaction (PHIPO:0001286) (#381)

Full Changelog: v2022-07-29...v2022-11-23

2022-07-29 July release

PHIPO July 2022 release

This release of PHIPO contains the following changes since the previous release (14 July 2021). The change list does not include changes to the ontology structure (e.g. terms with changed parent classes) or changes to other properties (e.g. term synonyms).

New terms

• sensitive to calcium ion starvation (PHIPO:0001270) (#368)
• decreased number of host galls during pathogen invasion (PHIPO:0001269) (#365)
• presence of host gall during pathogen invasion (PHIPO:0001268) (#365)
• level of pathogen produced RNA within host phenotype (PHIPO:0001267) (#362)
• increased host hemorrhage with pathogen (PHIPO:0001266) (#364)
• host hemorrhage with pathogen present (PHIPO:0001265) (#364)
• host physiological process affected by pathogen phenotype (PHIPO:0001264) (#364)
• host defense-induced RNA level phenotype (PHIPO:0001263) (#362)
• host defense-induced protein level phenotype (PHIPO:0001262) (#362)
• host cell inviable with pathogen (PHIPO:0001261) (#363)
• host cell viable with pathogen (PHIPO:0001260) (#363)
• host cell viability with pathogen phenotype (PHIPO:0001259) (#363)
• decreased expression of a host defense-related protein involved in a pathogen interaction (PHIPO:0001258) (#361)
• decreased level of host defense-induced protein (PHIPO:0001257) (#361)
• host defense-related protein involved in a pathogen interaction present (PHIPO:0001256) (#360)
• increased host immune inflammatory response with pathogen (PHIPO:0001255) (#358)
• host immune system inflammatory response activated by pathogen present (PHIPO:0001253) (#358)
• decreased pathogen tissue to tissue migration within host (PHIPO:0001252) (#357)
• host defense-induced protein present (PHIPO:0001251) (#356)

Renamed terms

• increased level of host defense-induced protein (PHIPO:0000991) (#346)
  • renamed from "increased level of host protein involved in a pathogen host interaction"
• host defense-induced RNA present (PHIPO:0001231) (#346)
  • renamed from "host RNA involved in a pathogen interaction present"
• decreased level of host defense-induced RNA (PHIPO:0001174) (#346)
  • renamed from "decreased level of host RNA involved in a pathogen interaction"
• increased level of host defense-induced RNA (PHIPO:0001104) (#346)
  • renamed from "increased level of host RNA involved in a pathogen interaction"
• host defense-induced phenolic compound present (PHIPO:0001230) (#346)
  • renamed from "pathogen-induced host phenolic compound present"
• host defense-induced phenolic compound absent (PHIPO:0001161) (#346)
  • renamed from "pathogen-induced host phenolic compound absent"
• increased level of host defense-induced reactive oxygen species (PHIPO:0001193) (#346)
  • renamed from "increased level of pathogen-induced host reactive oxygen species"
• decreased level of host defense-induced reactive oxygen species (PHIPO:0001192) (#346)
  • renamed from "decreased level of pathogen-induced host reactive oxygen species"
• host defense-induced reactive oxygen species absent (PHIPO:0000928) (#346)
  • renamed from "pathogen-induced host reactive oxygen species absent"
• host defense-induced reactive oxygen species present (PHIPO:0000927) (#346)
  • renamed from "pathogen-induced host reactive oxygen species present"
• host defense-induced oxidative burst level phenotype (PHIPO:0000924) (#346)
  • renamed from "pathogen-induced host oxidative burst level phenotype"
• increased level of host defense-induced reducing sugar in apoplast (PHIPO:0001227) (#346)
  • renamed from "increased level of host reducing sugar in apoplast induced by pathogen"
• decreased level of host defense-induced reducing sugar in apoplast (PHIPO:0001226) (#346)
  • renamed from "decreased level of host reducing sugar in apoplast induced by pathogen"
• host defense-induced callose deposition present (PHIPO:0001083) (#346)
  • renamed from "pathogen-induced callose deposition in host present"
• decreased level of host defense-induced callose deposition (PHIPO:0001015) (#346)
  • renamed from "decreased level of host callose deposition induced by pathogen"
• increased level of host defense-induced callose deposition (PHIPO:0001014) (#346)
  • renamed from "increased level of host callose deposition induced by pathogen"
• host defense-induced substance level phenotype (PHIPO:0001196) (#346)
  • renamed from "pathogen-induced host substance level phenotype"
• increased level of pathogen produced toxin within host (PHIPO:0001046) (#343)
  • renamed from "increased level of pathogen toxin within host"
• decreased level of pathogen produced toxin within host (PHIPO:0001045) (#343)
  • renamed from "decreased level of pathogen toxin within host"

Obsoleted terms

• abnormal host reproductive structure development induced by pathogen (PHIPO:0001164) (#347)
• host reproductive phenotype induced by pathogen (PHIPO:0001162) (#347)
• pathogen host interaction reproductive phenotype (PHIPO:0001163) (#347)
• pathogen colonization of host morphology phenotype PHIPO:0001007 (#350)
• pathogen host interaction organism level phenotype (PHIPO:0001067) (#348)
• pathogen host interaction host tissue phenotype (PHIPO:0000512) (#348)

Restored terms

The following terms were previously obsolete and are now active again:

• pathogen host interaction localization phenotype (PHIPO:0000236) (#344)

2021-07-14 release

Repeat of the previous release (v2021-07-13) to enable Zenodo integration.

2021-07-13 release

Preliminary release to test Zenodo integration