mkdocs.yml

site_name: ''
repo_url: https://github.com/OSIPI/pypi
theme:
  name: material
  logo: img/osipi.png
  icon:
    repo: fontawesome/brands/github
  features:
    - header.autohide
    - navigation.tabs
    - navigation.tabs.sticky
    - navigation.instant
    - navigation.instant.progress
    - navigation.sections
    - navigation.footer
    - navigation.indexes
    - toc.integrate
    - navigation.top
    - search.suggest
    - search.highlight
    - search.share
    - content.tabs.link
    - content.code.annotation
    - content.code.copy
    - content.code.select
    - tables
  language: en
  palette:
    - scheme: default
      primary: teal
      accent: purple
      toggle:
        icon: material/toggle-switch
        name: Switch to dark mode
    - scheme: slate
      toggle:
        icon: material/toggle-switch
        name: Switch to dark mode
      primary: teal
      accent: lime

plugins:
  - mkdocstrings:
      handlers:
        python:
          paths: ["src"]
  - gallery:
      examples_dirs: docs/examples
      gallery_dirs: docs/generated/gallery

extra_css:
  - stylesheets/extra.css

nav:
  - Home: index.md
  - User Guide:
      - Overview: user-guide/index.md
      - Installation: user-guide/install.md
      - Simulating data:
          - Overview: user-guide/simulate.md
          - Simulate: user-guide/gen_aif.md
      - Fitting data:
          - Overview: user-guide/fitting.md
          - Fit: user-guide/fit_tissue.md

  - About: about/index.md
  - Developer Guide: contribution/index.md
  - References:
      - references/index.md
      - Index:
          - references/models/index.md
          - AIF models:
              - references/models/aif_models/index.md
              - osipi.aif_parker: references/models/aif_models/aif_parker.md
              - osipi.aif_georgiou: references/models/aif_models/aif_georgiou.md
              - osipi.aif_weinmann: references/models/aif_models/aif_weinmann.md
          - Tissue models :
              - references/models/tissue_models/index.md
              - osipi.tofts: references/models/tissue_models/tofts.md
              - osipi.extended_tofts: references/models/tissue_models/extended_tofts.md

  - Examples: generated/gallery


markdown_extensions:
  - admonition
  - codehilite
  - footnotes
  - meta
  - toc:
      permalink: true
  - tables
  - pymdownx.arithmatex
  - pymdownx.betterem:
      smart_enable: all
  - pymdownx.highlight:
      anchor_linenums: true
      line_spans: __span
      pygments_lang_class: true
  - pymdownx.caret
  - pymdownx.critic
  - pymdownx.details
  - pymdownx.inlinehilite
  - pymdownx.magiclink
  - pymdownx.mark
  - pymdownx.smartsymbols
  - pymdownx.superfences
  - pymdownx.details
  - pymdownx.tasklist:
      custom_checkbox: true
  - pymdownx.tilde
  - pymdownx.tabbed:
        alternate_style: true
  - attr_list