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dashboard-config.yml
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title: "OBO Dashboard"
description: "Dashboard for OBO Foundry ontologies."
obo_score_weights:
no_base:
impact_factor: 5
max_impact: 5
overall_error:
impact_factor: 5
max_impact: 20
overall_warning:
impact_factor: 0.5
max_impact: 10
overall_info:
impact_factor: 0.1
max_impact: 5
report_errors:
impact_factor: 0.05
max_impact: 10
report_warning:
impact_factor: 0.01
max_impact: 5
report_info:
impact_factor: 0.005
max_impact: 3
impact:
impact_factor: 1
max_impact: 1
dashboard:
impact_factor: 1
max_impact: 1
ontologies:
registry: "https://raw.githubusercontent.com/OBOFoundry/OBOFoundry.github.io/master/registry/ontologies.yml"
custom:
- id: dpo
base_ns:
- http://purl.obolibrary.org/obo/FBcv_
- http://purl.obolibrary.org/obo/fbcv#
- id: hsapdv
base_ns:
- http://purl.obolibrary.org/obo/HsapDv_
- id: mmusdv
base_ns:
- http://purl.obolibrary.org/obo/MmusDv_
- id: olatdv
base_ns:
- http://purl.obolibrary.org/obo/OlatDv_
- id: omo
base_ns:
- http://purl.obolibrary.org/obo/IAO_
- http://purl.obolibrary.org/obo/iao#
- id: ontoneo
base_ns:
- http://purl.bioontology.org/OntONeo/ONTONEO_
- id: pdumdv
base_ns:
- http://purl.obolibrary.org/obo/PdumDv_
- id: exo
base_ns:
- http://purl.obolibrary.org/obo/ExO_
prefer_base: True
profile:
baseprofile: "https://raw.githubusercontent.com/ontodev/robot/master/robot-core/src/main/resources/report_profile.txt"
report_truncation_limit: 600
redownload_after_hours: 500
force_regenerate_dashboard_after_hours: 1500
dashboard_report_timeout_seconds: 288000
robot_opts: -v
environment:
ROBOT_JAR: /tools/robot.jar
ROBOT: robot
skip_existing: False
robot_additional_prefixes:
COVOC: "http://purl.obolibrary.org/obo/COVOC_"
AMPHX: "http://purl.obolibrary.org/obo/AMPHX_"
EFO: "http://www.ebi.ac.uk/efo/EFO_"
NCIT_ALT: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#
hymao: http://api.hymao.org/api/figure/fig_
bh_faldo: http://biohackathon.org/resource/faldo#
SBO: http://biomodels.net/SBO/SBO_
BIRDGENE: http://birdgenenames.org/cgnc/GeneReport?id=
dbpedia: http://dbpedia.org/resource/
dictyGene: http://dictybase.org/gene/DDB_
edam: http://edamontology.org/
edam: http://edamontology.org#
NDFRT: http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#
FBgn: http://flybase.org/reports/FBgn
HGNC: http://identifiers.org/hgnc/
MAMO: http://identifiers.org/mamo/MAMO_
mamo: http://identifiers.org/mamo#
NCBIGENE: http://identifiers.org/ncbigene/
ISNI: http://isni.org/isni/
OARCSFIG: http://oarcs-api.speciesfilegroup.org/api/figure/fig_
OWLAPIERROR: http://org.semanticweb.owlapi/error#
protege: http://protege.stanford.edu/plugins/owl/protege#
MESH: http://purl.bioontology.org/ontology/MESH/
NCBITAXONN: http://purl.bioontology.org/ontology/NCBITAXON/
CREDIT: http://purl.org/credit/ontology#CREDIT_
oban: http://purl.org/oban/
fma: http://purl.org/sig/ont/fma/fma
rgd: http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=
CHEMINF: http://semanticscience.org/resource/CHEMINF_
SIO: http://semanticscience.org/resource/SIO_
wikimedia: http://upload.wikimedia.org/wikipedia/commons/
vivoweb: http://vivoweb.org/ontology/core#
webarchive: http://web.archive.org/web/
BAO: http://www.bioassayontology.org/bao#BAO_
KISAO: http://www.biomodels.net/kisao/KISAO#KISAO_
ebicellline: http://www.ebi.ac.uk/cellline#
efo: http://www.ebi.ac.uk/efo/
SWO: http://www.ebi.ac.uk/swo/
EGGENE: http://www.ecogene.org/gene/EG
ENSEMBLEID: http://www.ensembl.org/id/
ENSEMBLEGENOMEID: http://www.ensemblgenomes.org/id/
GENENAMES: http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=
MGI: "http://www.informatics.jax.org/marker/MGI:"
ISNI: http://www.isni.org/
NCBIGENE: http://www.ncbi.nlm.nih.gov/gene/
SPOMBE: http://www.pombase.org/spombe/result/
WBGene: http://www.wormbase.org/species/c_elegans/gene/WBGene
yeastgenome: http://www.yeastgenome.org/locus/
ZFIN_GENE: http://zfin.org/action/marker/view/ZDB-GENE-
CIDO: "http://purl.obolibrary.org/obo/CIDO_"
dbpedia: "http://dbpedia.org/resource/"
EFO: "http://www.ebi.ac.uk/efo/EFO_"
ONTONEO: "http://purl.bioontology.org/OntONeo/ONTONEO_"