Example1.py

from neuromllite import Network, Population, Projection, RandomConnectivity


################################################################################
###   Build a new network

net = Network(id="net0")
net.notes = (
    "A simple network with 2 populations & projection between them. "
    + "No info yet on what the cells are so network can't be simulated."
)

print(net)


################################################################################
###   Add some populations

p0 = Population(id="pop0", size=5, component="iaf", properties={"color": "0 .8 0"})
p1 = Population(id="pop1", size=10, component="iaf", properties={"color": "0 0 .8"})

print(p1.to_json())

net.populations.append(p0)
net.populations.append(p1)


################################################################################
###   Add a projection

net.projections.append(
    Projection(id="proj0", presynaptic=p0.id, postsynaptic=p1.id, synapse="ampa")
)

net.projections[0].random_connectivity = RandomConnectivity(probability=0.5)


################################################################################
###   Save to JSON format

print(net)
net.id = "TestNetwork"

print(net.to_json())
new_file = net.to_json_file("Example1_%s.json" % net.id)


################################################################################
###   Export to some formats, e.g. try:
###        python Example1.py -graph2

from neuromllite.NetworkGenerator import check_to_generate_or_run
from neuromllite import Simulation
import sys

check_to_generate_or_run(sys.argv, Simulation(id="SimExample1", network=new_file))