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devtools::install_github("https://github.com/Nanostring-Biostats/InSituType", verbose = TRUE)
Downloading GitHub repo Nanostring-Biostats/InSituType@HEAD
Skipping 3 packages not available: SummarizedExperiment, sparseMatrixStats, SingleCellExperiment ##These packages are installed already.
── R CMD build ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔ checking for file ‘/private/var/folders/dv/fpbl4h8126jb08v99y8bq5w00000gn/T/RtmptOVE57/remotesa2393b4d5dad/Nanostring-Biostats-InSituType-7a7b6d1/DESCRIPTION’ ...
─ preparing ‘InSituType’:
✔ checking DESCRIPTION meta-information ...
─ cleaning src
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘InSituType_2.0.tar.gz’
system (cmd0): /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL
installing source package ‘InSituType’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’
using C++11
using SDK: ‘MacOSX15.0.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_64BIT_WORD=1 -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include/RcppCommon.h:30:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include/Rcpp/r/headers.h:66:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include/Rcpp/platform/compiler.h:100:10: fatal error: 'cmath' file not found
100 | #include
| ^~~~~~~
1 error generated.
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘InSituType’
removing ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/InSituType’
Warning message:
In i.p(...) :
installation of package ‘/var/folders/dv/fpbl4h8126jb08v99y8bq5w00000gn/T//RtmptOVE57/filea2395868338f/InSituType_2.0.tar.gz’ had non-zero exit status
Has anyone else encountered this?
The text was updated successfully, but these errors were encountered:
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Please see the error below:
system (cmd0): /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’
using C++11
using SDK: ‘MacOSX15.0.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_64BIT_WORD=1 -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include/RcppCommon.h:30:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include/Rcpp/r/headers.h:66:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include/Rcpp/platform/compiler.h:100:10: fatal error: 'cmath' file not found
100 | #include
| ^~~~~~~
1 error generated.
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘InSituType’
Warning message:
In i.p(...) :
installation of package ‘/var/folders/dv/fpbl4h8126jb08v99y8bq5w00000gn/T//RtmptOVE57/filea2395868338f/InSituType_2.0.tar.gz’ had non-zero exit status
Has anyone else encountered this?
The text was updated successfully, but these errors were encountered: