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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(choose_distance_cutoff)
export(createSpatialDelaunayNW_from_spatLocs)
export(decide_ReSegment_Operations)
export(estimate_MeanProfile)
export(fastReseg_flag_all_errors)
export(fastReseg_full_pipeline)
export(fastReseg_perFOV_full_process)
export(flagTranscripts_LDA_hyperplane)
export(flag_bad_transcripts)
export(getCellType_maxScore)
export(getNeighbors_transDF)
export(getScoreCellType_gene)
export(get_baselineCT)
export(get_neighborhood_content)
export(groupTranscripts_Delaunay)
export(groupTranscripts_dbscan)
export(plotSpatialScoreMultiCells)
export(prepResegDF)
export(prepare_perFOV_transDF)
export(runPreprocess)
export(runSegErrorEvaluation)
export(runSegRefinement)
export(runTranscriptErrorDetection)
export(scoreGenesInRef)
export(score_cell_segmentation_error)
export(update_transDF_ResegActions)
importFrom(GiottoClass,createSpatialNetwork)
importFrom(Matrix,colMeans)
importFrom(Matrix,rowSums)
importFrom(concaveman,concaveman)
importFrom(data.table,':=')
importFrom(data.table,.N)
importFrom(data.table,.SD)
importFrom(data.table,as.data.table)
importFrom(data.table,setDT)
importFrom(dbscan,dbscan)
importFrom(dplyr,between)
importFrom(fs,path)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_gradient2)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,unit)
importFrom(igraph,cluster_leiden)
importFrom(igraph,components)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,membership)
importFrom(methods,new)
importFrom(spatstat.geom,area.owin)
importFrom(spatstat.geom,box3)
importFrom(spatstat.geom,convexhull.xy)
importFrom(spatstat.geom,nncross)
importFrom(spatstat.geom,nndist)
importFrom(spatstat.geom,pp3)
importFrom(spatstat.geom,ppp)
importFrom(spatstat.geom,subset.pp3)
importFrom(spatstat.geom,subset.ppp)
importFrom(stats,aggregate)
importFrom(stats,as.formula)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,var)
importFrom(utils,read.csv)
importFrom(utils,timestamp)
importFrom(utils,write.csv)