adjusting for cell contamination (segmentation error) in models

[acjordan333]

Hi team,

In the blog post titled, "Impact of segmentation errors on DE", Dr. Danaher wrote that a paper was coming (and a corresponding blog post) that will provide some solutions on how to account for segmentation error (but not fully remove it). Is the blog post coming soon? If not, would I be able to request the code on how to implement this solution? What would be preferred - adjusting for the segmentation error or attempting to remove it with an algorithm like FastReseg?

[eveilyeverafter]

I think the post you are referring to in currently in review. You can take a look at the draft here:
#123