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Implement GRN visualization for evaluated algorithms #77

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ktakers opened this issue Jun 23, 2022 · 1 comment
Open

Implement GRN visualization for evaluated algorithms #77

ktakers opened this issue Jun 23, 2022 · 1 comment

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@ktakers
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ktakers commented Jun 23, 2022

Implement a script to apply a threshold on the ranked edges output by evaluated algorithms to construct a GRN, and output the inferred GRN as a Cytoscape or GraphSpace file for visualization.

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ktakers commented Jul 1, 2022

Create GRN tutorial account on GraphSpace. Upload graph to shared account and make the graph public. Output a link to a graph.

Create a graph that is the union of the inferred GRN and the ground truth networks that distinguishes between TP/FP/FN edges

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