mda equivalent of Rdkit's addHs #4889
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corey-taylor2
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G'day all,
Looking to extract a ligand and surrounding residues from a Universe but then to cap valences in a manner similar to Rdkit's addHs module to feed into some qchem workflows. Directly saving the selection as a pdb shows there are indeed unsatisfied valences.
I've Googled and searched and can't find a way to do this, so either it's so blindingly obvious that this topic will prove a useful reminder to others.... Or it's not as straightforward as I'd like it to be. Anyone have some code laying around to achieve my dreams? Cheers all.
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