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CITATION.bib
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% reference for the software itself
@misc{PhyloCoalSimulations.jl,
author = {C{\'e}cile An{\'e} <[email protected]>, John Fogg <[email protected]>, Joshua Justison <[email protected]>, and contributors},
title = {PhyloCoalSimulations.jl},
url = {https://github.com/JuliaPhylo/PhyloCoalSimulations.jl},
version = {v1.0.0},
year = {2024},
month = {12}
}
% reference for the package, and for the correlated inheritance model
@article{2023fogg_phylocoalsimulations,
author = {Fogg, John and Allman, Elizabeth S and An{\'e}, C{\'e}cile},
title = {{PhyloCoalSimulations}: A simulator for network multispecies coalescent
models, including a new extension for the inheritance of gene flow},
journal = {Systematic Biology},
year = {2023},
volume = {72},
number = {5},
pages = {1171-1179},
doi = {10.1093/sysbio/syad030},
}
% older bioRxiv preprint
@article{2023fogg_phylocoalsimulations_bioRxiv,
author = {Fogg, John and Allman, Elizabeth S and An{\'e}, C{\'e}cile},
title = {{PhyloCoalSimulations}: A simulator for network multispecies coalescent
models, including a new extension for the inheritance of gene flow},
elocation-id = {2023.01.11.523690},
year = {2023},
doi = {10.1101/2023.01.11.523690},
journal = {bioRxiv}
}
% reference for the PhyloNetworks package, which this package depends on
@article{2017SolislemusBastideAne_PhyloNetworks,
author = {Sol{\'\i}s-Lemus, Claudia and Bastide, Paul and An{\'e}, C{\'e}cile},
title = {PhyloNetworks: A Package for Phylogenetic Networks},
journal = {Molecular Biology and Evolution},
year = {2017},
volume = {34},
number = {12},
pages = {3292-3298},
doi = {10.1093/molbev/msx235},
}