diff --git a/docs/index.md b/docs/index.md new file mode 100644 index 0000000..b2ee43f --- /dev/null +++ b/docs/index.md @@ -0,0 +1,9 @@ +Human Behaviour Change Project Information Extraction (hbcpIE) +The project executes the following action: + +Indexes a collection of documents +Store them in a Lucene index +Extracts pieces of information from arbitrary passages. +Running the project +To run the project, simply type from your command-line. + diff --git a/docs/javadoc.sh b/docs/javadoc.sh new file mode 100644 index 0000000..24158b6 --- /dev/null +++ b/docs/javadoc.sh @@ -0,0 +1 @@ +/Library/Java/JavaVirtualMachines/jdk1.8.0_111.jdk/Contents/Home/jre/../bin/javadoc @options @packages \ No newline at end of file diff --git a/docs/options b/docs/options new file mode 100644 index 0000000..02a8277 --- /dev/null +++ b/docs/options @@ -0,0 +1,24 @@ +-classpath +'/Users/dganguly/.m2/repository/nekohtml/nekohtml/1.9.6.2/nekohtml-1.9.6.2.jar:/Users/dganguly/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2.1/tagsoup-1.2.1.jar:/Users/dganguly/.m2/repository/org/thymeleaf/thymeleaf/3.0.9.RELEASE/thymeleaf-3.0.9.RELEASE.jar:/Users/dganguly/.m2/repository/org/apache/james/apache-mime4j-core/0.7.2/apache-mime4j-core-0.7.2.jar:/Users/dganguly/.m2/repository/com/intellij/annotations/12.0/annotations-12.0.jar:/Users/dganguly/.m2/repository/org/apache/commons/commons-vfs2/2.0/commons-vfs2-2.0.jar:/Users/dganguly/.m2/repository/org/codehaus/mojo/animal-sniffer-annotations/1.14/animal-sniffer-annotations-1.14.jar:/Users/dganguly/.m2/repository/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.9.6/jackson-datatype-jdk8-2.9.6.jar:/Users/dganguly/.m2/repository/org/apache/maven/wagon/wagon-http/1.0-beta-6/wagon-http-1.0-beta-6.jar:/Users/dganguly/.m2/repository/org/attoparser/attoparser/2.0.4.RELEASE/attoparser-2.0.4.RELEASE.jar:/Users/dganguly/.m2/repository/org/springframework/boot/spring-boot-starter/2.0.5.RELEASE/spring-boot-starter-2.0.5.RELEASE.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-repository-metadata/2.2.1/maven-repository-metadata-2.2.1.jar:/Users/dganguly/.m2/repository/org/apache/sis/core/sis-metadata/0.6/sis-metadata-0.6.jar:/Users/dganguly/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/Users/dganguly/.m2/repository/org/json/json/20140107/json-20140107.jar:/Users/dganguly/.m2/repository/com/github/junrar/junrar/0.7/junrar-0.7.jar:/Users/dganguly/.m2/repository/com/google/j2objc/j2objc-annotations/1.1/j2objc-annotations-1.1.jar:/Users/dganguly/.m2/repository/javax/servlet/jsp/jstl/javax.servlet.jsp.jstl-api/1.2.1/javax.servlet.jsp.jstl-api-1.2.1.jar:/Users/dganguly/.m2/repository/org/apache/tomcat/embed/tomcat-embed-core/8.5.34/tomcat-embed-core-8.5.34.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-plugin-descriptor/2.2.1/maven-plugin-descriptor-2.2.1.jar:/Users/dganguly/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.9.6/jackson-core-2.9.6.jar:/Users/dganguly/.m2/repository/org/apache/cxf/cxf-rt-rs-client/3.0.3/cxf-rt-rs-client-3.0.3.jar:/Users/dganguly/.m2/repository/classworlds/classworlds/1.1/classworlds-1.1.jar:/Users/dganguly/.m2/repository/com/rometools/rome-utils/1.5.1/rome-utils-1.5.1.jar:/Users/dganguly/.m2/repository/org/slf4j/jul-to-slf4j/1.7.25/jul-to-slf4j-1.7.25.jar:/Users/dganguly/.m2/repository/org/apache/tomcat/embed/tomcat-embed-websocket/8.5.34/tomcat-embed-websocket-8.5.34.jar:/Users/dganguly/.m2/repository/org/springframework/boot/spring-boot-starter-tomcat/2.0.5.RELEASE/spring-boot-starter-tomcat-2.0.5.RELEASE.jar:/Users/dganguly/.m2/repository/edu/ucar/cdm/4.5.5/cdm-4.5.5.jar:/Users/dganguly/.m2/repository/io/springfox/springfox-spring-web/2.7.0/springfox-spring-web-2.7.0.jar:/Users/dganguly/.m2/repository/com/google/errorprone/error_prone_annotations/2.1.3/error_prone_annotations-2.1.3.jar:/Users/dganguly/.m2/repository/org/codehaus/plexus/plexus-container-default/1.0-alpha-9-stable-1/plexus-container-default-1.0-alpha-9-stable-1.jar:/Users/dganguly/.m2/repository/org/apache/pdfbox/fontbox/2.0.3/fontbox-2.0.3.jar:/Users/dganguly/.m2/repository/org/apache/tika/tika-parsers/1.14/tika-parsers-1.14.jar:/Users/dganguly/.m2/repository/com/rometools/rome/1.5.1/rome-1.5.1.jar:/Users/dganguly/.m2/repository/com/jayway/jsonpath/json-path/2.4.0/json-path-2.4.0.jar:/Users/dganguly/.m2/repository/com/apple/AppleJavaExtensions/1.4/AppleJavaExtensions-1.4.jar:/Users/dganguly/.m2/repository/org/apache/tika/tika-app/1.14/tika-app-1.14.jar:/Users/dganguly/.m2/repository/org/apache/cxf/cxf-core/3.0.3/cxf-core-3.0.3.jar:/Users/dganguly/.m2/repository/javax/measure/jsr-275/0.9.3/jsr-275-0.9.3.jar:/Users/dganguly/.m2/repository/org/apache/lucene/lucene-join/5.3.1/lucene-join-5.3.1.jar:/Users/dganguly/.m2/repository/com/googlecode/json-simple/json-simple/1.1.1/json-simple-1.1.1.jar:/Users/dganguly/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.54/bcprov-jdk15on-1.54.jar:/Users/dganguly/.m2/repository/javax/servlet/jsp/jsp-api/2.1/jsp-api-2.1.jar:/Users/dganguly/.m2/repository/javax/annotation/javax.annotation-api/1.3.2/javax.annotation-api-1.3.2.jar:/Users/dganguly/.m2/repository/org/checkerframework/checker-compat-qual/2.0.0/checker-compat-qual-2.0.0.jar:/Users/dganguly/.m2/repository/org/apache/poi/poi-ooxml-schemas/3.15/poi-ooxml-schemas-3.15.jar:/Users/dganguly/.m2/repository/org/apache/maven/doxia/doxia-logging-api/1.1/doxia-logging-api-1.1.jar:/Users/dganguly/.m2/repository/org/javassist/javassist/3.21.0-GA/javassist-3.21.0-GA.jar:/Users/dganguly/.m2/repository/org/apache/httpcomponents/httpcore/4.4.10/httpcore-4.4.10.jar:/Users/dganguly/.m2/repository/nekohtml/xercesMinimal/1.9.6.2/xercesMinimal-1.9.6.2.jar:/Users/dganguly/.m2/repository/org/apache/ws/xmlschema/xmlschema-core/2.1.0/xmlschema-core-2.1.0.jar:/Users/dganguly/.m2/repository/org/apache/maven/wagon/wagon-http-lightweight/1.0-beta-6/wagon-http-lightweight-1.0-beta-6.jar:/Users/dganguly/.m2/repository/com/drewnoakes/metadata-extractor/2.9.1/metadata-extractor-2.9.1.jar:/Users/dganguly/.m2/repository/org/springframework/spring-expression/5.0.9.RELEASE/spring-expression-5.0.9.RELEASE.jar:/Users/dganguly/.m2/repository/com/healthmarketscience/jackcess/jackcess/2.1.4/jackcess-2.1.4.jar:/Users/dganguly/.m2/repository/io/springfox/springfox-swagger2/2.7.0/springfox-swagger2-2.7.0.jar:/Users/dganguly/.m2/repository/com/pff/java-libpst/0.8.1/java-libpst-0.8.1.jar:/Users/dganguly/.m2/repository/org/apache/lucene/lucene-memory/5.3.1/lucene-memory-5.3.1.jar:/Users/dganguly/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar:/Users/dganguly/.m2/repository/org/springframework/spring-webmvc/5.0.9.RELEASE/spring-webmvc-5.0.9.RELEASE.jar:/Users/dganguly/.m2/repository/xerces/xercesImpl/2.8.0/xercesImpl-2.8.0.jar:/Users/dganguly/.m2/repository/com/fasterxml/classmate/1.3.4/classmate-1.3.4.jar:/Users/dganguly/.m2/repository/org/codelibs/jhighlight/1.0.2/jhighlight-1.0.2.jar:/Users/dganguly/.m2/repository/com/fasterxml/jackson/datatype/jackson-datatype-jsr310/2.9.6/jackson-datatype-jsr310-2.9.6.jar:/Users/dganguly/.m2/repository/org/codehaus/plexus/plexus-interactivity-api/1.0-alpha-4/plexus-interactivity-api-1.0-alpha-4.jar:/Users/dganguly/.m2/repository/org/hibernate/validator/hibernate-validator/6.0.12.Final/hibernate-validator-6.0.12.Final.jar:/Users/dganguly/.m2/repository/org/apache/lucene/lucene-core/5.3.1/lucene-core-5.3.1.jar:/Users/dganguly/.m2/repository/org/slf4j/slf4j-log4j12/1.7.25/slf4j-log4j12-1.7.25.jar:/Users/dganguly/.m2/repository/org/tukaani/xz/1.5/xz-1.5.jar:/Users/dganguly/.m2/repository/org/gagravarr/vorbis-java-tika/0.8/vorbis-java-tika-0.8.jar:/Users/dganguly/.m2/repository/commons-fileupload/commons-fileupload/1.3/commons-fileupload-1.3.jar:/Users/dganguly/.m2/repository/org/apache/poi/poi-scratchpad/3.15/poi-scratchpad-3.15.jar:/Users/dganguly/.m2/repository/edu/ucar/udunits/4.5.5/udunits-4.5.5.jar:/Users/dganguly/.m2/repository/org/apache/httpcomponents/httpmime/4.5.6/httpmime-4.5.6.jar:/Users/dganguly/.m2/repository/org/apache/tika/tika-serialization/1.14/tika-serialization-1.14.jar:/Users/dganguly/.m2/repository/org/apache/pdfbox/pdfbox-debugger/2.0.3/pdfbox-debugger-2.0.3.jar:/Users/dganguly/.m2/repository/org/apache/opennlp/opennlp-maxent/3.0.3/opennlp-maxent-3.0.3.jar:/Users/dganguly/.m2/repository/org/bouncycastle/bcpkix-jdk15on/1.54/bcpkix-jdk15on-1.54.jar:/Users/dganguly/.m2/repository/org/apache/maven/wagon/wagon-provider-api/1.0-beta-6/wagon-provider-api-1.0-beta-6.jar:/Users/dganguly/.m2/repository/org/opengis/geoapi/3.0.0/geoapi-3.0.0.jar:/Users/dganguly/.m2/repository/org/apache/sis/core/sis-referencing/0.6/sis-referencing-0.6.jar:/Users/dganguly/.m2/repository/org/quartz-scheduler/quartz/2.3.0/quartz-2.3.0.jar:/Users/dganguly/.m2/repository/io/springfox/springfox-swagger-ui/2.7.0/springfox-swagger-ui-2.7.0.jar:/Users/dganguly/.m2/repository/org/apache/maven/scm/maven-scm-provider-svn-commons/1.4/maven-scm-provider-svn-commons-1.4.jar:/Users/dganguly/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar:/Users/dganguly/.m2/repository/com/google/guava/guava/23.6-jre/guava-23.6-jre.jar:/Users/dganguly/.m2/repository/javax/json/javax.json-api/1.1.2/javax.json-api-1.1.2.jar:/Users/dganguly/.m2/repository/org/apache/pdfbox/pdfbox-tools/2.0.3/pdfbox-tools-2.0.3.jar:/Users/dganguly/.m2/repository/org/tallison/jmatio/1.2/jmatio-1.2.jar:/Users/dganguly/.m2/repository/net/minidev/json-smart/2.2.1/json-smart-2.2.1.jar:/Users/dganguly/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.20/plexus-utils-3.0.20.jar:/Users/dganguly/.m2/repository/org/apache/lucene/lucene-analyzers-common/5.3.1/lucene-analyzers-common-5.3.1.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-artifact-manager/2.2.1/maven-artifact-manager-2.2.1.jar:/Users/dganguly/.m2/repository/org/apache/cxf/cxf-rt-transports-http/3.0.3/cxf-rt-transports-http-3.0.3.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-artifact/2.2.1/maven-artifact-2.2.1.jar:/Users/dganguly/.m2/repository/org/springframework/spring-jcl/5.0.9.RELEASE/spring-jcl-5.0.9.RELEASE.jar:/Users/dganguly/.m2/repository/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar:/Users/dganguly/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar:/Users/dganguly/.m2/repository/org/apache/maven/wagon/wagon-ssh/1.0-beta-6/wagon-ssh-1.0-beta-6.jar:/Users/dganguly/.m2/repository/org/unbescape/unbescape/1.1.5.RELEASE/unbescape-1.1.5.RELEASE.jar:/Users/dganguly/.m2/repository/org/apache/poi/poi-ooxml/3.15/poi-ooxml-3.15.jar:/Users/dganguly/.m2/repository/net/sf/jwordnet/jwnl/1.3.3/jwnl-1.3.3.jar:/Users/dganguly/.m2/repository/org/apache/maven/doxia/doxia-sink-api/1.1/doxia-sink-api-1.1.jar:/Users/dganguly/.m2/repository/org/apache/cxf/cxf-rt-frontend-jaxrs/3.0.3/cxf-rt-frontend-jaxrs-3.0.3.jar:/Users/dganguly/.m2/repository/org/apache/httpcomponents/httpclient/4.5.6/httpclient-4.5.6.jar:/Users/dganguly/.m2/repository/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.jar:/Users/dganguly/.m2/repository/net/arnx/jsonic/1.2.11/jsonic-1.2.11.jar:/Users/dganguly/.m2/repository/net/bytebuddy/byte-buddy/1.7.11/byte-buddy-1.7.11.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-settings/2.2.1/maven-settings-2.2.1.jar:/Users/dganguly/.m2/repository/com/beust/jcommander/1.35/jcommander-1.35.jar:/Users/dganguly/.m2/repository/org/apache/pdfbox/pdfbox/2.0.3/pdfbox-2.0.3.jar:/Users/dganguly/.m2/repository/edu/ucar/grib/4.5.5/grib-4.5.5.jar:/Users/dganguly/.m2/repository/io/swagger/swagger-annotations/1.5.13/swagger-annotations-1.5.13.jar:/Users/dganguly/.m2/repository/com/jcraft/jsch/0.1.38/jsch-0.1.38.jar:/Users/dganguly/.m2/repository/org/springframework/spring-context/5.0.9.RELEASE/spring-context-5.0.9.RELEASE.jar:/Users/dganguly/.m2/repository/org/apache/pdfbox/jempbox/1.8.12/jempbox-1.8.12.jar:/Users/dganguly/.m2/repository/io/springfox/springfox-spi/2.7.0/springfox-spi-2.7.0.jar:/Users/dganguly/.m2/repository/org/bouncycastle/bcmail-jdk15on/1.54/bcmail-jdk15on-1.54.jar:/Users/dganguly/.m2/repository/com/optimaize/languagedetector/language-detector/0.5/language-detector-0.5.jar:/Users/dganguly/.m2/repository/org/jboss/logging/jboss-logging/3.3.2.Final/jboss-logging-3.3.2.Final.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-plugin-registry/2.2.1/maven-plugin-registry-2.2.1.jar:/Users/dganguly/.m2/repository/org/gagravarr/vorbis-java-core/0.8/vorbis-java-core-0.8.jar:/Users/dganguly/.m2/repository/org/springframework/plugin/spring-plugin-core/1.2.0.RELEASE/spring-plugin-core-1.2.0.RELEASE.jar:/Users/dganguly/.m2/repository/org/apache/sis/storage/sis-storage/0.6/sis-storage-0.6.jar:/Users/dganguly/.m2/repository/org/apache/maven/scm/maven-scm-provider-svnexe/1.4/maven-scm-provider-svnexe-1.4.jar:/Users/dganguly/.m2/repository/com/mchange/mchange-commons-java/0.2.11/mchange-commons-java-0.2.11.jar:/Users/dganguly/.m2/repository/org/reflections/reflections/0.9.11/reflections-0.9.11.jar:/Users/dganguly/.m2/repository/org/apache/tika/tika-langdetect/1.14/tika-langdetect-1.14.jar:/Users/dganguly/.m2/repository/com/google/protobuf/protobuf-java/2.4.1/protobuf-java-2.4.1.jar:/Users/dganguly/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.9.0/jackson-annotations-2.9.0.jar:/Users/dganguly/.m2/repository/org/apache/xmlbeans/xmlbeans/2.6.0/xmlbeans-2.6.0.jar:/Users/dganguly/.m2/repository/org/apache/poi/poi/3.15/poi-3.15.jar:/Users/dganguly/.m2/repository/regexp/regexp/1.3/regexp-1.3.jar:/Users/dganguly/.m2/repository/javax/xml/bind/jaxb-api/2.3.0/jaxb-api-2.3.0.jar:/Users/dganguly/.m2/repository/org/apache/lucene/lucene-queries/5.3.1/lucene-queries-5.3.1.jar:/Users/dganguly/.m2/repository/org/jdom/jdom2/2.0.6/jdom2-2.0.6.jar:/Users/dganguly/.m2/repository/io/springfox/springfox-swagger-common/2.7.0/springfox-swagger-common-2.7.0.jar:/Users/dganguly/.m2/repository/org/codehaus/mojo/exec-maven-plugin/1.6.0/exec-maven-plugin-1.6.0.jar:/Users/dganguly/.m2/repository/com/googlecode/mp4parser/isoparser/1.1.18/isoparser-1.1.18.jar:/Users/dganguly/.m2/repository/com/googlecode/juniversalchardet/juniversalchardet/1.0.3/juniversalchardet-1.0.3.jar:/Users/dganguly/.m2/repository/org/springframework/spring-beans/5.0.9.RELEASE/spring-beans-5.0.9.RELEASE.jar:/Users/dganguly/.m2/repository/com/healthmarketscience/jackcess/jackcess-encrypt/2.1.1/jackcess-encrypt-2.1.1.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-toolchain/2.2.1/maven-toolchain-2.2.1.jar:/Users/dganguly/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar:/Users/dganguly/.m2/repository/org/jsoup/jsoup/1.10.2/jsoup-1.10.2.jar:/Users/dganguly/.m2/repository/org/apache/tika/tika-core/1.14/tika-core-1.14.jar:/Users/dganguly/.m2/repository/org/codehaus/woodstox/woodstox-core-asl/4.4.1/woodstox-core-asl-4.4.1.jar:/Users/dganguly/.m2/repository/com/adobe/xmp/xmpcore/5.1.2/xmpcore-5.1.2.jar:/Users/dganguly/.m2/repository/org/apache/lucene/lucene-queryparser/5.3.1/lucene-queryparser-5.3.1.jar:/Users/dganguly/.m2/repository/org/apache/lucene/lucene-classification/5.3.1/lucene-classification-5.3.1.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-profile/2.2.1/maven-profile-2.2.1.jar:/Users/dganguly/.m2/repository/xalan/xalan/2.7.0/xalan-2.7.0.jar:/Users/dganguly/.m2/repository/org/apache/tika/tika-batch/1.14/tika-batch-1.14.jar:/Users/dganguly/.m2/repository/net/sf/ehcache/ehcache-core/2.6.2/ehcache-core-2.6.2.jar:/Users/dganguly/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.23/ejml-0.23.jar:/Users/dganguly/.m2/repository/net/minidev/accessors-smart/1.1/accessors-smart-1.1.jar:/Users/dganguly/.m2/repository/javax/ws/rs/javax.ws.rs-api/2.0.1/javax.ws.rs-api-2.0.1.jar:/Users/dganguly/.m2/repository/org/glassfish/javax.json/1.0.4/javax.json-1.0.4.jar:/Users/dganguly/.m2/repository/de/jollyday/jollyday/0.4.9/jollyday-0.4.9.jar:/Users/dganguly/.m2/repository/org/ow2/asm/asm/6.0_ALPHA/asm-6.0_ALPHA.jar:/Users/dganguly/.m2/repository/org/springframework/spring-aop/5.0.9.RELEASE/spring-aop-5.0.9.RELEASE.jar:/Users/dganguly/.m2/repository/commons-httpclient/commons-httpclient/3.0/commons-httpclient-3.0.jar:/Users/dganguly/.m2/repository/com/google/code/gson/gson/2.8.5/gson-2.8.5.jar:/Users/dganguly/.m2/repository/org/springframework/boot/spring-boot-starter-web/2.0.5.RELEASE/spring-boot-starter-web-2.0.5.RELEASE.jar:/Users/dganguly/.m2/repository/org/springframework/boot/spring-boot-autoconfigure/2.0.5.RELEASE/spring-boot-autoconfigure-2.0.5.RELEASE.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-plugin-api/2.2.1/maven-plugin-api-2.2.1.jar:/Users/dganguly/.m2/repository/de/l3s/boilerpipe/boilerpipe/1.1.0/boilerpipe-1.1.0.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-plugin-parameter-documenter/2.2.1/maven-plugin-parameter-documenter-2.2.1.jar:/Users/dganguly/.m2/repository/io/springfox/springfox-schema/2.7.0/springfox-schema-2.7.0.jar:/Users/dganguly/.m2/repository/com/io7m/xom/xom/1.2.10/xom-1.2.10.jar:/Users/dganguly/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-core/2.2.1/maven-core-2.2.1.jar:/Users/dganguly/.m2/repository/net/java/dev/jna/jna/4.5.2/jna-4.5.2.jar:/Users/dganguly/.m2/repository/io/springfox/springfox-core/2.7.0/springfox-core-2.7.0.jar:/Users/dganguly/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar:/Users/dganguly/.m2/repository/org/apache/maven/scm/maven-scm-api/1.4/maven-scm-api-1.4.jar:/Users/dganguly/.m2/repository/commons-io/commons-io/2.5/commons-io-2.5.jar:/Users/dganguly/.m2/repository/edu/stanford/nlp/stanford-corenlp/3.9.1/stanford-corenlp-3.9.1.jar:/Users/dganguly/.m2/repository/com/github/virtuald/curvesapi/1.04/curvesapi-1.04.jar:/Users/dganguly/.m2/repository/org/glassfish/web/javax.servlet.jsp.jstl/1.2.2/javax.servlet.jsp.jstl-1.2.2.jar:/Users/dganguly/.m2/repository/org/apache/james/apache-mime4j-dom/0.7.2/apache-mime4j-dom-0.7.2.jar:/Users/dganguly/.m2/repository/org/thymeleaf/extras/thymeleaf-extras-java8time/3.0.1.RELEASE/thymeleaf-extras-java8time-3.0.1.RELEASE.jar:/Users/dganguly/.m2/repository/org/apache/lucene/lucene-sandbox/5.3.1/lucene-sandbox-5.3.1.jar:/Users/dganguly/.m2/repository/org/apache/tika/tika-xmp/1.14/tika-xmp-1.14.jar:/Users/dganguly/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-error-diagnostics/2.2.1/maven-error-diagnostics-2.2.1.jar:/Users/dganguly/.m2/repository/org/apache/opennlp/opennlp-tools/1.5.3/opennlp-tools-1.5.3.jar:/Users/dganguly/.m2/repository/log4j/log4j/1.2.17/log4j-1.2.17.jar:/Users/dganguly/.m2/repository/edu/ucar/jj2000/5.2/jj2000-5.2.jar:/Users/dganguly/.m2/repository/org/apache/maven/wagon/wagon-ssh-common/1.0-beta-6/wagon-ssh-common-1.0-beta-6.jar:/Users/dganguly/.m2/repository/org/mapstruct/mapstruct/1.1.0.Final/mapstruct-1.1.0.Final.jar:/Users/dganguly/.m2/repository/javax/validation/validation-api/2.0.1.Final/validation-api-2.0.1.Final.jar:/Users/dganguly/.m2/repository/org/springframework/spring-core/5.0.9.RELEASE/spring-core-5.0.9.RELEASE.jar:/Users/dganguly/.m2/repository/joda-time/joda-time/2.9.9/joda-time-2.9.9.jar:/Users/dganguly/.m2/repository/org/apache/lucene/lucene-highlighter/5.3.1/lucene-highlighter-5.3.1.jar:/Users/dganguly/.m2/repository/org/apache/commons/commons-math3/3.6.1/commons-math3-3.6.1.jar:/Users/dganguly/.m2/repository/org/springframework/spring-web/5.0.9.RELEASE/spring-web-5.0.9.RELEASE.jar:/Users/dganguly/.m2/repository/javax/javaee-web-api/7.0/javaee-web-api-7.0.jar:/Users/dganguly/.m2/repository/org/apache/commons/commons-csv/1.0/commons-csv-1.0.jar:/Users/dganguly/.m2/repository/io/swagger/swagger-models/1.5.13/swagger-models-1.5.13.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-project/2.2.1/maven-project-2.2.1.jar:/Users/dganguly/.m2/repository/org/apache/sis/core/sis-utility/0.6/sis-utility-0.6.jar:/Users/dganguly/.m2/repository/net/jcip/jcip-annotations/1.0/jcip-annotations-1.0.jar:/Users/dganguly/.m2/repository/org/springframework/plugin/spring-plugin-metadata/1.2.0.RELEASE/spring-plugin-metadata-1.2.0.RELEASE.jar:/Users/dganguly/.m2/repository/org/itadaki/bzip2/0.9.1/bzip2-0.9.1.jar:/Users/dganguly/.m2/repository/commons-cli/commons-cli/1.2/commons-cli-1.2.jar:/Users/dganguly/.m2/repository/org/apache/maven/reporting/maven-reporting-api/2.2.1/maven-reporting-api-2.2.1.jar:/Users/dganguly/.m2/repository/org/springframework/boot/spring-boot-starter-json/2.0.5.RELEASE/spring-boot-starter-json-2.0.5.RELEASE.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-monitor/2.2.1/maven-monitor-2.2.1.jar:/Users/dganguly/.m2/repository/org/apache/commons/commons-collections4/4.1/commons-collections4-4.1.jar:/Users/dganguly/.m2/repository/org/thymeleaf/thymeleaf-spring5/3.0.9.RELEASE/thymeleaf-spring5-3.0.9.RELEASE.jar:/Users/dganguly/.m2/repository/org/apache/maven/maven-model/2.2.1/maven-model-2.2.1.jar:/Users/dganguly/.m2/repository/org/apache/commons/commons-compress/1.12/commons-compress-1.12.jar:/Users/dganguly/.m2/repository/edu/ucar/netcdf4/4.5.5/netcdf4-4.5.5.jar:/Users/dganguly/.m2/repository/com/fasterxml/jackson/module/jackson-module-parameter-names/2.9.6/jackson-module-parameter-names-2.9.6.jar:/Users/dganguly/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.9.6/jackson-databind-2.9.6.jar:/Users/dganguly/.m2/repository/org/apache/tomcat/embed/tomcat-embed-el/8.5.34/tomcat-embed-el-8.5.34.jar:/Users/dganguly/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.11/plexus-interpolation-1.11.jar:/Users/dganguly/.m2/repository/org/slf4j/jcl-over-slf4j/1.7.25/jcl-over-slf4j-1.7.25.jar:/Users/dganguly/.m2/repository/org/springframework/boot/spring-boot-starter-thymeleaf/2.0.5.RELEASE/spring-boot-starter-thymeleaf-2.0.5.RELEASE.jar:/Users/dganguly/.m2/repository/org/codehaus/woodstox/stax2-api/3.1.4/stax2-api-3.1.4.jar:/Users/dganguly/.m2/repository/org/apache/maven/wagon/wagon-http-shared/1.0-beta-6/wagon-http-shared-1.0-beta-6.jar:/Users/dganguly/.m2/repository/edu/ucar/httpservices/4.5.5/httpservices-4.5.5.jar:/Users/dganguly/.m2/repository/backport-util-concurrent/backport-util-concurrent/3.1/backport-util-concurrent-3.1.jar:/Users/dganguly/.m2/repository/org/apache/commons/commons-exec/1.3/commons-exec-1.3.jar:/Users/dganguly/.m2/repository/javax/servlet/jsp/jstl/jstl-api/1.2/jstl-api-1.2.jar:/Users/dganguly/.m2/repository/org/apache/sis/storage/sis-netcdf/0.6/sis-netcdf-0.6.jar:/Users/dganguly/.m2/repository/javax/servlet/javax.servlet-api/3.1.0/javax.servlet-api-3.1.0.jar:/Users/dganguly/.m2/repository/org/springframework/boot/spring-boot/2.0.5.RELEASE/spring-boot-2.0.5.RELEASE.jar' +-encoding +'UTF-8' +-protected +-sourcepath +'/Users/dganguly/research/gitrepo/hbcpIE/src/main/java' +-author +-bottom +'Copyright © 2018. All rights reserved.' +-charset +'UTF-8' +-d +'/Users/dganguly/research/gitrepo/hbcpIE/target/site/apidocs' +-docencoding +'UTF-8' +-doctitle +'hbcpIE 0.0.1-SNAPSHOT API' +-linkoffline +'https://docs.oracle.com/javase/7/docs/api' '/Users/dganguly/research/gitrepo/hbcpIE/target/javadoc-bundle-options' +-use +-version +-windowtitle +'hbcpIE 0.0.1-SNAPSHOT API' \ No newline at end of file diff --git a/docs/package-list b/docs/package-list new file mode 100644 index 0000000..245f393 --- /dev/null +++ b/docs/package-list @@ -0,0 +1,11 @@ +api +experiments +extractor +glm +indexer +nb +normrsv +ref +servlets +tableanalyzer +wvec diff --git a/docs/packages b/docs/packages new file mode 100644 index 0000000..2866dec --- /dev/null +++ b/docs/packages @@ -0,0 +1,11 @@ +ref +tableanalyzer +experiments +servlets +extractor +nb +api +wvec +glm +indexer +normrsv \ No newline at end of file diff --git a/docs/script.js b/docs/script.js new file mode 100644 index 0000000..b346356 --- /dev/null +++ b/docs/script.js @@ -0,0 +1,30 @@ +function show(type) +{ + count = 0; + for (var key in methods) { + var row = document.getElementById(key); + if ((methods[key] & type) != 0) { + row.style.display = ''; + row.className = (count++ % 2) ? rowColor : altColor; + } + else + row.style.display = 'none'; + } + updateTabs(type); +} + +function updateTabs(type) +{ + for (var value in tabs) { + var sNode = document.getElementById(tabs[value][0]); + var spanNode = sNode.firstChild; + if (value == type) { + sNode.className = activeTableTab; + spanNode.innerHTML = tabs[value][1]; + } + else { + sNode.className = tableTab; + spanNode.innerHTML = "" + tabs[value][1] + ""; + } + } +} diff --git a/docs/stylesheet.css b/docs/stylesheet.css new file mode 100644 index 0000000..98055b2 --- /dev/null +++ b/docs/stylesheet.css @@ -0,0 +1,574 @@ +/* Javadoc style sheet */ +/* +Overall document style +*/ + +@import url('resources/fonts/dejavu.css'); + +body { + background-color:#ffffff; + color:#353833; + font-family:'DejaVu Sans', Arial, Helvetica, sans-serif; + font-size:14px; + margin:0; +} +a:link, a:visited { + text-decoration:none; + color:#4A6782; +} +a:hover, a:focus { + text-decoration:none; + color:#bb7a2a; +} +a:active { + text-decoration:none; + color:#4A6782; +} +a[name] { + color:#353833; +} +a[name]:hover { + text-decoration:none; + color:#353833; +} +pre { + font-family:'DejaVu Sans Mono', monospace; + font-size:14px; +} +h1 { + font-size:20px; +} +h2 { + font-size:18px; +} +h3 { + font-size:16px; + font-style:italic; +} +h4 { + font-size:13px; +} +h5 { + font-size:12px; +} +h6 { + font-size:11px; +} +ul { + list-style-type:disc; +} +code, tt { + font-family:'DejaVu Sans Mono', monospace; + font-size:14px; + padding-top:4px; + margin-top:8px; + line-height:1.4em; +} +dt code { + font-family:'DejaVu Sans Mono', monospace; + font-size:14px; + padding-top:4px; +} +table tr td dt code { + font-family:'DejaVu Sans Mono', monospace; + font-size:14px; + vertical-align:top; + padding-top:4px; +} +sup { + font-size:8px; +} +/* +Document title and Copyright styles +*/ +.clear { + clear:both; + height:0px; + overflow:hidden; +} +.aboutLanguage { + float:right; + padding:0px 21px; + font-size:11px; + z-index:200; + margin-top:-9px; +} +.legalCopy { + margin-left:.5em; +} +.bar a, .bar a:link, .bar a:visited, .bar a:active { + color:#FFFFFF; + text-decoration:none; +} +.bar a:hover, .bar a:focus { + color:#bb7a2a; +} +.tab { + background-color:#0066FF; + color:#ffffff; + padding:8px; + width:5em; + font-weight:bold; +} +/* +Navigation bar styles +*/ +.bar { + background-color:#4D7A97; + color:#FFFFFF; + padding:.8em .5em .4em .8em; + height:auto;/*height:1.8em;*/ + font-size:11px; + margin:0; +} +.topNav { + background-color:#4D7A97; + color:#FFFFFF; + float:left; + padding:0; + width:100%; + clear:right; + height:2.8em; + padding-top:10px; + overflow:hidden; + font-size:12px; +} +.bottomNav { + margin-top:10px; + background-color:#4D7A97; + color:#FFFFFF; + float:left; + padding:0; + width:100%; + clear:right; + height:2.8em; + padding-top:10px; + overflow:hidden; + font-size:12px; +} +.subNav { + background-color:#dee3e9; + float:left; + width:100%; + overflow:hidden; + font-size:12px; +} +.subNav div { + clear:left; + float:left; + padding:0 0 5px 6px; + text-transform:uppercase; +} +ul.navList, ul.subNavList { + float:left; + margin:0 25px 0 0; + padding:0; +} +ul.navList li{ + list-style:none; + float:left; + padding: 5px 6px; + text-transform:uppercase; +} +ul.subNavList li{ + list-style:none; + float:left; +} +.topNav a:link, .topNav a:active, .topNav a:visited, .bottomNav a:link, .bottomNav a:active, .bottomNav a:visited { + color:#FFFFFF; + text-decoration:none; + text-transform:uppercase; +} +.topNav a:hover, .bottomNav a:hover { + text-decoration:none; + color:#bb7a2a; + text-transform:uppercase; +} +.navBarCell1Rev { + background-color:#F8981D; + color:#253441; + margin: auto 5px; +} +.skipNav { + position:absolute; + top:auto; + left:-9999px; + overflow:hidden; +} +/* +Page header and footer styles +*/ +.header, .footer { + clear:both; + margin:0 20px; + padding:5px 0 0 0; +} +.indexHeader { + margin:10px; + position:relative; +} +.indexHeader span{ + margin-right:15px; +} +.indexHeader h1 { + font-size:13px; +} +.title { + color:#2c4557; + margin:10px 0; +} +.subTitle { + margin:5px 0 0 0; +} +.header ul { + margin:0 0 15px 0; + padding:0; +} +.footer ul { + margin:20px 0 5px 0; +} +.header ul li, .footer ul li { + list-style:none; + font-size:13px; +} +/* +Heading styles +*/ +div.details ul.blockList ul.blockList ul.blockList li.blockList h4, div.details ul.blockList ul.blockList ul.blockListLast li.blockList h4 { + background-color:#dee3e9; + border:1px solid #d0d9e0; + margin:0 0 6px -8px; + padding:7px 5px; +} +ul.blockList ul.blockList ul.blockList li.blockList h3 { + background-color:#dee3e9; + border:1px solid #d0d9e0; + margin:0 0 6px -8px; + padding:7px 5px; +} +ul.blockList ul.blockList li.blockList h3 { + padding:0; + margin:15px 0; +} +ul.blockList li.blockList h2 { + padding:0px 0 20px 0; +} +/* +Page layout container styles +*/ +.contentContainer, .sourceContainer, .classUseContainer, .serializedFormContainer, .constantValuesContainer { + clear:both; + padding:10px 20px; + position:relative; +} +.indexContainer { + margin:10px; + position:relative; + font-size:12px; +} +.indexContainer h2 { + font-size:13px; + padding:0 0 3px 0; +} +.indexContainer ul { + margin:0; + padding:0; +} +.indexContainer ul li { + list-style:none; + padding-top:2px; +} +.contentContainer .description dl dt, .contentContainer .details dl dt, .serializedFormContainer dl dt { + font-size:12px; + font-weight:bold; + margin:10px 0 0 0; + color:#4E4E4E; +} +.contentContainer .description dl dd, .contentContainer .details dl dd, .serializedFormContainer dl dd { + margin:5px 0 10px 0px; + font-size:14px; + font-family:'DejaVu Sans Mono',monospace; +} +.serializedFormContainer dl.nameValue dt { + margin-left:1px; + font-size:1.1em; + display:inline; + font-weight:bold; +} +.serializedFormContainer dl.nameValue dd { + margin:0 0 0 1px; + font-size:1.1em; + display:inline; +} +/* +List styles +*/ +ul.horizontal li { + display:inline; + font-size:0.9em; +} +ul.inheritance { + margin:0; + padding:0; +} +ul.inheritance li { + display:inline; + list-style:none; +} +ul.inheritance li ul.inheritance { + margin-left:15px; + padding-left:15px; + padding-top:1px; +} +ul.blockList, ul.blockListLast { + margin:10px 0 10px 0; + padding:0; +} +ul.blockList li.blockList, ul.blockListLast li.blockList { + list-style:none; + margin-bottom:15px; + line-height:1.4; +} +ul.blockList ul.blockList li.blockList, ul.blockList ul.blockListLast li.blockList { + padding:0px 20px 5px 10px; + border:1px solid #ededed; + background-color:#f8f8f8; +} +ul.blockList ul.blockList ul.blockList li.blockList, ul.blockList ul.blockList ul.blockListLast li.blockList { + padding:0 0 5px 8px; + background-color:#ffffff; + border:none; +} +ul.blockList ul.blockList ul.blockList ul.blockList li.blockList { + margin-left:0; + padding-left:0; + padding-bottom:15px; + border:none; +} +ul.blockList ul.blockList ul.blockList ul.blockList li.blockListLast { + list-style:none; + border-bottom:none; + padding-bottom:0; +} +table tr td dl, table tr td dl dt, table tr td dl dd { + margin-top:0; + margin-bottom:1px; +} +/* +Table styles +*/ +.overviewSummary, .memberSummary, .typeSummary, .useSummary, .constantsSummary, .deprecatedSummary { + width:100%; + border-left:1px solid #EEE; + border-right:1px solid #EEE; + border-bottom:1px solid #EEE; +} +.overviewSummary, .memberSummary { + padding:0px; +} +.overviewSummary caption, .memberSummary caption, .typeSummary caption, +.useSummary caption, .constantsSummary caption, .deprecatedSummary caption { + position:relative; + text-align:left; + background-repeat:no-repeat; + color:#253441; + font-weight:bold; + clear:none; + overflow:hidden; + padding:0px; + padding-top:10px; + padding-left:1px; + margin:0px; + white-space:pre; +} +.overviewSummary caption a:link, .memberSummary caption a:link, .typeSummary caption a:link, +.useSummary caption a:link, .constantsSummary caption a:link, .deprecatedSummary caption a:link, +.overviewSummary caption a:hover, .memberSummary caption a:hover, .typeSummary caption a:hover, +.useSummary caption a:hover, .constantsSummary caption a:hover, .deprecatedSummary caption a:hover, +.overviewSummary caption a:active, .memberSummary caption a:active, .typeSummary caption a:active, +.useSummary caption a:active, .constantsSummary caption a:active, .deprecatedSummary caption a:active, +.overviewSummary caption a:visited, .memberSummary caption a:visited, .typeSummary caption a:visited, +.useSummary caption a:visited, .constantsSummary caption a:visited, .deprecatedSummary caption a:visited { + color:#FFFFFF; +} +.overviewSummary caption span, .memberSummary caption span, .typeSummary caption span, +.useSummary caption span, .constantsSummary caption span, .deprecatedSummary caption span { + white-space:nowrap; + padding-top:5px; + padding-left:12px; + padding-right:12px; + padding-bottom:7px; + display:inline-block; + float:left; + background-color:#F8981D; + border: none; + height:16px; +} +.memberSummary caption span.activeTableTab span { + white-space:nowrap; + padding-top:5px; + padding-left:12px; + padding-right:12px; + margin-right:3px; + display:inline-block; + float:left; + background-color:#F8981D; + height:16px; +} +.memberSummary caption span.tableTab span { + white-space:nowrap; + padding-top:5px; + padding-left:12px; + padding-right:12px; + margin-right:3px; + display:inline-block; + float:left; + background-color:#4D7A97; + height:16px; +} +.memberSummary caption span.tableTab, .memberSummary caption span.activeTableTab { + padding-top:0px; + padding-left:0px; + padding-right:0px; + background-image:none; + float:none; + display:inline; +} +.overviewSummary .tabEnd, .memberSummary .tabEnd, .typeSummary .tabEnd, +.useSummary .tabEnd, .constantsSummary .tabEnd, .deprecatedSummary .tabEnd { + display:none; + width:5px; + position:relative; + float:left; + background-color:#F8981D; +} +.memberSummary .activeTableTab .tabEnd { + display:none; + width:5px; + margin-right:3px; + position:relative; + float:left; + background-color:#F8981D; +} +.memberSummary .tableTab .tabEnd { + display:none; + width:5px; + margin-right:3px; + position:relative; + background-color:#4D7A97; + float:left; + +} +.overviewSummary td, .memberSummary td, .typeSummary td, +.useSummary td, .constantsSummary td, .deprecatedSummary td { + text-align:left; + padding:0px 0px 12px 10px; +} +th.colOne, th.colFirst, th.colLast, .useSummary th, .constantsSummary th, +td.colOne, td.colFirst, td.colLast, .useSummary td, .constantsSummary td{ + vertical-align:top; + padding-right:0px; + padding-top:8px; + padding-bottom:3px; +} +th.colFirst, th.colLast, th.colOne, .constantsSummary th { + background:#dee3e9; + text-align:left; + padding:8px 3px 3px 7px; +} +td.colFirst, th.colFirst { + white-space:nowrap; + font-size:13px; +} +td.colLast, th.colLast { + font-size:13px; +} +td.colOne, th.colOne { + font-size:13px; +} +.overviewSummary td.colFirst, .overviewSummary th.colFirst, +.useSummary td.colFirst, .useSummary th.colFirst, +.overviewSummary td.colOne, .overviewSummary th.colOne, +.memberSummary td.colFirst, .memberSummary th.colFirst, +.memberSummary td.colOne, .memberSummary th.colOne, +.typeSummary td.colFirst{ + width:25%; + vertical-align:top; +} +td.colOne a:link, td.colOne a:active, td.colOne a:visited, td.colOne a:hover, td.colFirst a:link, td.colFirst a:active, td.colFirst a:visited, td.colFirst a:hover, td.colLast a:link, td.colLast a:active, td.colLast a:visited, td.colLast a:hover, .constantValuesContainer td a:link, .constantValuesContainer td a:active, .constantValuesContainer td a:visited, .constantValuesContainer td a:hover { + font-weight:bold; +} +.tableSubHeadingColor { + background-color:#EEEEFF; +} +.altColor { + background-color:#FFFFFF; +} +.rowColor { + background-color:#EEEEEF; +} +/* +Content styles +*/ +.description pre { + margin-top:0; +} +.deprecatedContent { + margin:0; + padding:10px 0; +} +.docSummary { + padding:0; +} + +ul.blockList ul.blockList ul.blockList li.blockList h3 { + font-style:normal; +} + +div.block { + font-size:14px; + font-family:'DejaVu Serif', Georgia, "Times New Roman", Times, serif; +} + +td.colLast div { + padding-top:0px; +} + + +td.colLast a { + padding-bottom:3px; +} +/* +Formatting effect styles +*/ +.sourceLineNo { + color:green; + padding:0 30px 0 0; +} +h1.hidden { + visibility:hidden; + overflow:hidden; + font-size:10px; +} +.block { + display:block; + margin:3px 10px 2px 0px; + color:#474747; +} +.deprecatedLabel, .descfrmTypeLabel, .memberNameLabel, .memberNameLink, +.overrideSpecifyLabel, .packageHierarchyLabel, .paramLabel, .returnLabel, +.seeLabel, .simpleTagLabel, .throwsLabel, .typeNameLabel, .typeNameLink { + font-weight:bold; +} +.deprecationComment, .emphasizedPhrase, .interfaceName { + font-style:italic; +} + +div.block div.block span.deprecationComment, div.block div.block span.emphasizedPhrase, +div.block div.block span.interfaceName { + font-style:normal; +} + +div.contentContainer ul.blockList li.blockList h2{ + padding-bottom:0px; +}