diff --git a/README.md b/README.md index ade830f..60b7346 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ # Functional Annotation and Association Testing Pipeline Pipeline to run variant effect prediction and rare-variant association tests for continuous phenotypes on UK Biobank exome sequencing (or other) data. It uses [Snakemake](https://snakemake.github.io/) to parallelize large parts of the analysis across chromosomes and phenotypes. Conda on a Linux system is the main requirement for getting started. -This pipeline was originally run on different virtual machines in local mode. For full cluster support, users can easily modify `./run.sh` to use SLURM, SGE or other schedulers with Snakemake. +This pipeline was originally run on different virtual machines in local mode. A snakemake profile for slurm is provided at `./slurm`. ## Getting Started ### Installing basic dependencies