pyproject.toml

[tool.poetry]
name = "ukb-pret"
version = "0.2.0"
description = "UK Biobank PRS Release Evaluation Tool"
authors = ["Genomics plc <info@genomicsplc.com>"]
license = "BSD-3-Clause"
packages = [
	{ include = "ukb_pret", from = "src" }
]

[tool.poetry.dependencies]
python = ">=3.7.1, <3.10"
scipy = "^1.7.1"
scikit-learn = "^1.0"
pandas = "^1.3.4"
statsmodels = "^0.13.0"
importlib-metadata = "^4.8.1"
plotnine = "^0.8.0"
PyYAML = "^6.0"
pycodestyle = "^2.8.0"
lifelines = "^0.26.3"
fpdf2 = "^2.4.6"
seaborn = "^0.11.2"

[tool.poetry.dev-dependencies]
pytest = "^4.0"
pytest-cov = "^2.0"

[[tool.poetry.source]]
name = 'genomics'
url = 'https://artifactory.genomicsplc.com/api/pypi/pypi-local/simple'

[tool.poetry.scripts]
evaluate-prs = 'ukb_pret.cli:run_from_command_line'
evaluate-prs-rap = 'ukb_pret.cli:run_from_command_line_rap'

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"