diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..9cecc1d --- /dev/null +++ b/LICENSE @@ -0,0 +1,674 @@ + GNU GENERAL PUBLIC LICENSE + Version 3, 29 June 2007 + + Copyright (C) 2007 Free Software Foundation, Inc. + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The GNU General Public License is a free, copyleft license for +software and other kinds of works. + + The licenses for most software and other practical works are designed +to take away your freedom to share and change the works. By contrast, +the GNU General Public License is intended to guarantee your freedom to +share and change all versions of a program--to make sure it remains free +software for all its users. We, the Free Software Foundation, use the +GNU General Public License for most of our software; it applies also to +any other work released this way by its authors. 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Disclaimer of Warranty. + + THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY +APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT +HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY +OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, +THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR +PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM +IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF +ALL NECESSARY SERVICING, REPAIR OR CORRECTION. + + 16. Limitation of Liability. + + IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING +WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS +THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY +GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE +USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF +DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD +PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), +EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF +SUCH DAMAGES. + + 17. Interpretation of Sections 15 and 16. + + If the disclaimer of warranty and limitation of liability provided +above cannot be given local legal effect according to their terms, +reviewing courts shall apply local law that most closely approximates +an absolute waiver of all civil liability in connection with the +Program, unless a warranty or assumption of liability accompanies a +copy of the Program in return for a fee. + + END OF TERMS AND CONDITIONS + + How to Apply These Terms to Your New Programs + + If you develop a new program, and you want it to be of the greatest +possible use to the public, the best way to achieve this is to make it +free software which everyone can redistribute and change under these terms. + + To do so, attach the following notices to the program. It is safest +to attach them to the start of each source file to most effectively +state the exclusion of warranty; and each file should have at least +the "copyright" line and a pointer to where the full notice is found. + + {one line to give the program's name and a brief idea of what it does.} + Copyright (C) {year} {name of author} + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + +Also add information on how to contact you by electronic and paper mail. + + If the program does terminal interaction, make it output a short +notice like this when it starts in an interactive mode: + + {project} Copyright (C) {year} {fullname} + This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + +The hypothetical commands `show w' and `show c' should show the appropriate +parts of the General Public License. Of course, your program's commands +might be different; for a GUI interface, you would use an "about box". + + You should also get your employer (if you work as a programmer) or school, +if any, to sign a "copyright disclaimer" for the program, if necessary. +For more information on this, and how to apply and follow the GNU GPL, see +. + + The GNU General Public License does not permit incorporating your program +into proprietary programs. If your program is a subroutine library, you +may consider it more useful to permit linking proprietary applications with +the library. If this is what you want to do, use the GNU Lesser General +Public License instead of this License. But first, please read +. diff --git a/README.md b/README.md new file mode 100644 index 0000000..d06c57a --- /dev/null +++ b/README.md @@ -0,0 +1,9 @@ +# homebrew-supportingsoftware + +Homebrew recipes for the supporting software required to compile or install fluidity on Mac OS X. Existing homebrew users should tap the repository with: + +`brew tap FluidityProject/supportingsoftware` + +A Fluidity installation should then be available with: + +`brew install fluidity` diff --git a/fluidity.rb b/fluidity.rb new file mode 100644 index 0000000..5dce46e --- /dev/null +++ b/fluidity.rb @@ -0,0 +1,51 @@ + +class Fluidity < Formula + desc "" + homepage "http://FluidityProject.github.io" + url "https://github.com/FluidityProject/fluidity.git", :branch => "ElCapitanFixes" + sha256 "" + version "4.13" + + depends_on :mpi => [:cc, :cxx, :f77, :f90] + depends_on :fortran + depends_on :x11 + depends_on "FluidityProject/supportingsoftware/petsc-fluidity" + depends_on "FluidityProject/supportingsoftware/zoltan" + depends_on "python" + depends_on "numpy" + depends_on "udunits" + depends_on "gnu-sed" + depends_on "vtk5" + depends_on "judy" + depends_on "spatialindex" + depends_on "FluidityProject/supportingsoftware/libspud" + + option "enable-2d-adaptivity", "Build and link libmba2 for 2d adaptivity" + option "enable-debug", "Build debug version" + + keg_only "Lets test this first!" + + fails_with :llvm + fails_with :gcc_4_0 + + def oprefix(f) + Formula[f].opt_prefix + end + + def install + # ENV.deparallelize # if your formula fails when building in parallel + + ENV["CPPFLAGS"] = "-I#{oprefix("origimbo/tools/zoltan")}/include -I#{oprefix("vtk5")}/include/vtk-5.10" + ENV["LDFLAGS"] = "-L#{oprefix("vtk5")}/lib/vtk-5.10 -lvtkIO -lvtkHybrid -lvtkGraphics -lvtkRendering -lvtkFiltering -lvtkCommon" + + ENV["PETSC_DIR"] = "#{HOMEBREW_PREFIX}/opt/petsc-fluidity" + + system "./configure", "--prefix=#{prefix}", + "--with-libspud-root=#{HOMEBREW_PREFIX}", + "--with-spatialindex-root=#{HOMEBREW_PREFIX}", + "--with-judy=#{oprefix("judy")}/lib/libjudy.a" + system "make" + system "make", "install" + end + +end diff --git a/libspud.rb b/libspud.rb new file mode 100644 index 0000000..0f9d2f6 --- /dev/null +++ b/libspud.rb @@ -0,0 +1,44 @@ +# Documentation: https://github.com/Homebrew/homebrew/blob/master/share/doc/homebrew/Formula-Cookbook.md +# http://www.rubydoc.info/github/Homebrew/homebrew/master/Formula +# PLEASE REMOVE ALL GENERATED COMMENTS BEFORE SUBMITTING YOUR PULL REQUEST! + +class Libspud < Formula + desc "" + homepage "" + url "lp:spud", :using => :bzr + sha256 "" + version "1.1" + + # depends_on "cmake" => :build + depends_on "libxml2" + depends_on "python" + depends_on "trang" + depends_on "pygtk" => "with-libglade" + depends_on :fortran + + bottle do + root_url "https://github.com/FluidityProject/homebrew-supportingsoftware/releases/download/v1.0/" + cellar :any_skip_relocation + sha256 "caec3fe5d64de3500520d86d8460aec1002dc284a42b1066b8e47d566701105d" => :mavericks + end + + env :std + + fails_with :llvm + + def install + # ENV.deparallelize # if your formula fails when building in parallel + + # Remove unrecognized options if warned by configure + system "./configure", "--prefix=#{prefix}" + system "make" + system "make", "install" # if this fails, try separate make/make install steps + + inreplace "#{bin}/diamond", "/usr/share/diamond/gui/diamond.svg", "#{prefix}/share/diamond/gui/diamond.svg" + + end + + test do + system "true" + end +end diff --git a/petsc-fluidity.rb b/petsc-fluidity.rb new file mode 100644 index 0000000..89e7337 --- /dev/null +++ b/petsc-fluidity.rb @@ -0,0 +1,93 @@ +# Documentation: https://github.com/Homebrew/homebrew/blob/master/share/doc/homebrew/Formula-Cookbook.md +# http://www.rubydoc.info/github/Homebrew/homebrew/master/Formula + +class PetscFluidity < Formula + desc "" + homepage "" + url "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-3.6.3.tar.gz" + version "3.6.3-fluidity" + sha256 "2458956c876496f3c8160591324459be7c11f2e1ce09ad98347394c67a46d858" + + depends_on "cmake" => :build + depends_on :x11 # if your formula requires any X11/XQuartz components + depends_on "hypre" + depends_on "metis" + depends_on "parmetis" + depends_on "scalapack" + depends_on "suite-sparse" + depends_on "mumps" + depends_on "hwloc" + depends_on "netcdf" => "with-fortran" + depends_on "hdf5" => "with-mpi" + depends_on "valgrind" + depends_on :mpi => [:cc, :cxx, :f77, :f90] + depends_on :fortran + + bottle do + root_url "https://github.com/FluidityProject/homebrew-supportingsoftware/releases/download/v1.0/" + sha256 "952c231f62acbf308fbe0f42cb42e17a72b2dcc79edeb6295f9c78cb2128dc3b" => :mavericks + end + + keg_only "Don't conflict with default homebrew petsc installation." + + fails_with :llvm + fails_with :gcc_4_0 + + def oprefix(f) + Formula[f].opt_prefix + end + + + + def install + ENV.deparallelize + + ENV.delete "CC" + ENV.delete "CXX" + ENV.delete "F77" + ENV.delete "FC" + + ENV["PETSC_DIR"] = Dir.getwd + + system "./configure", "--with-shared-libraries=0", + "CC=#{ENV["MPICC"]}", + "CXX=#{ENV["MPICXX"]}", + "FC=#{ENV["MPIF77"]}", + "F77=#{ENV["MPIFC"]}", + "--with-debugging=0", + "--with-fortran-interfaces=1", + "--download-blacs", + "--with-hypre-dir=#{oprefix("hypre")}", + "--download-ml", + "--download-ctetgen", + "--download-chaco", + "--with-metis-dir=#{oprefix("metis")}", + "--with-parmetis-dir=#{oprefix("parmetis")}", + "--with-netcdf=1", + "--with-netcdf-dir=#{oprefix("netcdf")}", + "--with-hdf5", + "--with-hdf5-dir=#{oprefix("hdf5")}", + "--with-mumps-dir=#{oprefix("mumps")}/libexec", + "--with-scalapack-dir=#{oprefix("scalapack")}", + "--with-suitesparse-dir=#{oprefix("suite-sparse")}", + "--with-scalar-type=real", + "--with-hwloc-dir=#{oprefix("hwloc")}", + "--prefix=#{prefix}" + system "make", "all" + system "make", "install" + + end + + test do + # `test do` will create, run in and delete a temporary directory. + # + # This test will fail and we won't accept that! It's enough to just replace + # "false" with the main program this formula installs, but it'd be nice if you + # were more thorough. Run the test with `brew test petsc-lite`. Options passed + # to `brew install` such as `--HEAD` also need to be provided to `brew test`. + # + # The installed folder is not in the path, so use the entire path to any + # executables being tested: `system "#{bin}/program", "do", "something"`. + system "false" + end +end diff --git a/transfig.rb b/transfig.rb new file mode 100644 index 0000000..782ad4b --- /dev/null +++ b/transfig.rb @@ -0,0 +1,73 @@ +class Transfig < Formula + homepage 'http://www.xfig.org' + url 'https://downloads.sourceforge.net/mcj/transfig.3.2.5e.tar.gz' + version '3.2.5e' + + depends_on 'homebrew/x11/imake' => :build + depends_on 'jpeg' + depends_on 'ghostscript' + depends_on :x11 + depends_on 'gcc' + + fails_with :clang do + cause "clang fails to process xfig's imake rules" + end + fails_with :llvm + fails_with :gcc_4_0 + + env :std + + def install + # transfig does not like to execute makefiles in parallel + ENV.deparallelize + + # Patch tranfig/Imakefile + inreplace "transfig/Imakefile", "XCOMM BINDIR = /usr/bin/X11", + "BINDIR = #{bin}\n"+ # set install dir for bin + "USRLIBDIR = #{lib}\n" # set install dir for lib + inreplace "transfig/Imakefile", "XCOMM MANDIR = $(MANSOURCEPATH)$(MANSUFFIX)", + "MANDIR = #{man}$(MANSUFFIX)" + inreplace "transfig/Imakefile", "XCOMM USELATEX2E = -DLATEX2E", + "USELATEX2E = -DLATEX2E" + + # Patch fig2dev/Imakefile + inreplace "fig2dev/Imakefile", "XCOMM BINDIR = /usr/bin/X11", + "BINDIR = #{bin}\n"+ # set install dir for bin + "USRLIBDIR = #{lib}\n" # set install dir for lib + inreplace "fig2dev/Imakefile", "XCOMM MANDIR = $(MANSOURCEPATH)$(MANSUFFIX)", + "MANDIR = #{man}$(MANSUFFIX)" + inreplace "fig2dev/Imakefile", "XFIGLIBDIR = /usr/local/lib/X11/xfig", + "XFIGLIBDIR = #{share}" + inreplace "fig2dev/Imakefile","XCOMM USEINLINE = -DUSE_INLINE", + "USEINLINE = -DUSE_INLINE" + inreplace "fig2dev/Imakefile", "RGB = $(LIBDIR)/rgb.txt", "RGB = #{MacOS::X11.share}/X11/rgb.txt" + inreplace "fig2dev/Imakefile", "PNGINC = -I/usr/include/X11","PNGINC = -I#{MacOS::X11.include}" + inreplace "fig2dev/Imakefile", "PNGLIBDIR = $(USRLIBDIR)","PNGLIBDIR = #{MacOS::X11.lib}" + inreplace "fig2dev/Imakefile", "ZLIBDIR = $(USRLIBDIR)", "ZLIBDIR = /usr/lib" + inreplace "fig2dev/Imakefile", "XPMLIBDIR = $(USRLIBDIR)", "XPMLIBDIR = #{MacOS::X11.lib}" + inreplace "fig2dev/Imakefile", "XPMINC = -I/usr/include/X11", "XPMINC = -I#{MacOS::X11.include}/X11" + inreplace "fig2dev/Imakefile", "XCOMM DDA4 = -DA4", "DDA4 = -DA4" + inreplace "fig2dev/Imakefile", "FIG2DEV_LIBDIR = /usr/local/lib/fig2dev", + "FIG2DEV_LIBDIR = #{lib}/fig2dev" + + # generate Makefiles + system "make clean" + system "xmkmf" + system "make Makefiles" + + # build everything + system "make", "CC=#{ENV["CC"]}", "CXX=#{ENV["CXX"]}", 'CCOPTIONS=""' + + # install everything + system "make install" + system "make install.man" + + end + + test do + + system "echo hello" + + end + +end diff --git a/zoltan.rb b/zoltan.rb new file mode 100644 index 0000000..c664a03 --- /dev/null +++ b/zoltan.rb @@ -0,0 +1,56 @@ +class Zoltan < Formula + homepage "http://www.cs.sandia.gov/Zoltan" + url "http://www.cs.sandia.gov/~kddevin/Zoltan_Distributions/zoltan_distrib_v3.81.tar.gz" + sha256 "9d6f2f9e2b37456cab7fe6714d51cd6d613374e915e6cc9f7fddcd72e3f38780" + + option "without-check", "Skip build-time tests (not recommended)" + + depends_on 'parmetis' + depends_on :fortran + + mpilang = [:cc, :cxx, :f90] + depends_on :mpi => mpilang + + bottle do + root_url "https://github.com/FluidityProject/homebrew-supportingsoftware/releases/download/v1.0/" + sha256 "7ecf099174c6e0687921605777f2a4c666aa83a1f8e8970678156f2dcc8eae90" => :mavericks + end + + + fails_with :llvm + fails_with :gcc_4_0 + + ENV["OMPI_FC"] = ENV["FC"] + + def oprefix(f) + Formula[f].opt_prefix + end + + def install + ENV.deparallelize + + args = [ + "--prefix=#{prefix}", + "CC=#{ENV["MPICC"]}", + "CXX=#{ENV["MPICXX"]}", + ] + args << "--with-parmetis" + args << "--enable-zoltan-cppdriver" + args << "--enable-mpi" + args << "--with-mpi-compilers=yes" + args << "--with-gnumake" + args << "--enable-zoltan-cppdriver" + args << "--disable-examples" + args << "--with-parmetis-libdir=#{oprefix("parmetis")}/lib/" + args << "--with-parmetis-incdir=#{oprefix("parmetis")}/include" + args << "--enable-f90interface" + args << "FC=#{ENV["MPIFC"]}" + + mkdir "zoltan-build" do + system "../configure", *args + system "make", "everything" + system "make", "check" if build.with? "check" + system "make", "install" + end + end +end