From 5658108d41cd3b156cb6bac91bbc3901e21669c9 Mon Sep 17 00:00:00 2001
From: David van Zessen <d.vanzessen@erasmusmc.nl>
Date: Mon, 9 Oct 2023 08:33:43 +0000
Subject: [PATCH] readme+

---
 README.md | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/README.md b/README.md
index ea8520c..8cbc6a0 100644
--- a/README.md
+++ b/README.md
@@ -2,6 +2,11 @@
 
 This repository is the official implementation of Julian van Toledo's MSc Project. 
 
+## Howto
+
+ - 1: TODO preprocessingscript.R/Preprocessing_icgc.R description
+ - 2: Run hyperparam_opt.py
+
 ## Requirements
 Python 3.7.12 <br>
 R version 4.2.0 <br>
@@ -11,8 +16,9 @@ See imports in nnetsurvivaltransfer.ipynb for further dependencies
 
 ## Scripts
 nnetsurvivaltransfer.ipynb - Jupyter Notebook containing the transfer learning model and various experiments that were performed <br>
-preprocessingscript.R - Preprocessing of the TCGA data <br>
+~~preprocessingscript.R - Preprocessing of the TCGA data~~ broken  
 Preprocessing_icgc.R - Preprocessing of the ICGC data <br>
+
 TensorBoardNotebook.ipynb - Notebook containing a simple script to start TensorBoard which allows users to view training logs of their model <br>
 nnet_survival.py - Script of nnet_survival containing loss function, proportional hazards layer, and function to make survival matrices
 cox_nnet_v2.py - Script containing the Cox-nnet model which is used for comparison to our model