Skip to content

Latest commit

 

History

History
42 lines (28 loc) · 2.28 KB

Common_RunnableDB.md

File metadata and controls

42 lines (28 loc) · 2.28 KB

Base.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::Base; DumpGenome.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::DumpGenome; DumpProteome.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::DumpProteome; DumpTranscriptome.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::DumpTranscriptome; EGSpeciesFactory.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::EGSpeciesFactory; FastaSplit.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::FastaSplit;

todo rewrite using BioPython

Base.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::Base;

AnalysisDelete.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::AnalysisDelete; AnalysisRestore.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::AnalysisRestore; AnalysisRun.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::AnalysisRun; AnalysisSetup.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::AnalysisSetup;

CheckOFDatabase.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::CheckOFDatabase; CreateOFDatabase.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::CreateOFDatabase;

DatabaseDumper.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::DatabaseDumper; DumpChromSizes.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::DumpChromSizes; DumpGenome.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::DumpGenome; DumpProteome.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::DumpProteome; DumpTranscriptome.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::DumpTranscriptome;

FastaSplit.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::FastaSplit;

EGSpeciesFactory.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::EGSpeciesFactory; EmailReport.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::EmailReport; FetchExternal.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::FetchExternal; IndexGenome.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::IndexGenome; ParametersFromJson.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::ParametersFromJson;

SqlCmd.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::SqlCmd; SqlHealthcheck.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::SqlHealthcheck;

AnalyzeTables.pm:package Bio::EnsEMBL::EGPipeline::Common::RunnableDB::AnalyzeTables;