From 109d2d2f24107a433f059c6fc03ef005cb5acf28 Mon Sep 17 00:00:00 2001
From: GitHub Action <action@github.com>
Date: Fri, 17 May 2024 06:27:28 +0000
Subject: [PATCH] docs update

---
 _sources/installing/index.rst.txt |   6 ++----
 installing/index.html             |  14 +++-----------
 objects.inv                       | Bin 6140 -> 6100 bytes
 performance/performance-1.pdf     | Bin 17125 -> 17125 bytes
 performance/performance-2.pdf     | Bin 16109 -> 16109 bytes
 searchindex.js                    |   2 +-
 6 files changed, 6 insertions(+), 16 deletions(-)

diff --git a/_sources/installing/index.rst.txt b/_sources/installing/index.rst.txt
index 97ecc3a..4fb3456 100644
--- a/_sources/installing/index.rst.txt
+++ b/_sources/installing/index.rst.txt
@@ -119,8 +119,7 @@ GTDB-Tk reference data
 
 GTDB-Tk requires ~110G of external data that needs to be downloaded and unarchived:
 
-For full package:
-'''''''''''''''''
+**For full package:**
 
 .. code-block:: bash
 
@@ -128,8 +127,7 @@ For full package:
     wget https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz ( mirror for Australia)
     tar xvzf gtdbtk_data.tar.gz
 
-For split package:
-''''''''''''''''''
+**For split package:**
 
 To create an archive from the GTDB-Tk release data parts:
 
diff --git a/installing/index.html b/installing/index.html
index 7e537cf..cf7a282 100644
--- a/installing/index.html
+++ b/installing/index.html
@@ -127,11 +127,7 @@
 <li class="toctree-l2"><a class="reference internal" href="#hardware-requirements">Hardware requirements</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#python-libraries">Python libraries</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#third-party-software">Third-party software</a></li>
-<li class="toctree-l2"><a class="reference internal" href="#gtdb-tk-reference-data">GTDB-Tk reference data</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="#for-full-package">For full package:</a></li>
-<li class="toctree-l3"><a class="reference internal" href="#for-split-package">For split package:</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="#gtdb-tk-reference-data">GTDB-Tk reference data</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../faq.html">FAQ</a></li>
@@ -373,16 +369,13 @@ <h2>Python libraries<a class="headerlink" href="#python-libraries" title="Permal
 <div class="section" id="gtdb-tk-reference-data">
 <span id="installing-gtdbtk-reference-data"></span><h2>GTDB-Tk reference data<a class="headerlink" href="#gtdb-tk-reference-data" title="Permalink to this headline">¶</a></h2>
 <p>GTDB-Tk requires ~110G of external data that needs to be downloaded and unarchived:</p>
-<div class="section" id="for-full-package">
-<h3>For full package:<a class="headerlink" href="#for-full-package" title="Permalink to this headline">¶</a></h3>
+<p><strong>For full package:</strong></p>
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>wget<span class="w"> </span>https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz
 wget<span class="w"> </span>https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz<span class="w"> </span><span class="o">(</span><span class="w"> </span>mirror<span class="w"> </span><span class="k">for</span><span class="w"> </span>Australia<span class="o">)</span>
 tar<span class="w"> </span>xvzf<span class="w"> </span>gtdbtk_data.tar.gz
 </pre></div>
 </div>
-</div>
-<div class="section" id="for-split-package">
-<h3>For split package:<a class="headerlink" href="#for-split-package" title="Permalink to this headline">¶</a></h3>
+<p><strong>For split package:</strong></p>
 <p>To create an archive from the GTDB-Tk release data parts:</p>
 <ol class="arabic simple">
 <li><p>Ensure all parts of the GTDB-Tk release data are in the same directory.</p></li>
@@ -466,7 +459,6 @@ <h3>For split package:<a class="headerlink" href="#for-split-package" title="Per
 </tbody>
 </table>
 </div>
-</div>
 </div>
 
 
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diff --git a/performance/performance-2.pdf b/performance/performance-2.pdf
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