From aed56f849486909704a4dd8523468faa03314567 Mon Sep 17 00:00:00 2001 From: James McLaughlin Date: Mon, 19 Aug 2024 01:36:01 +0100 Subject: [PATCH] add skip obsolete to ols config --- configs/datasource_configs/ols.json | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/configs/datasource_configs/ols.json b/configs/datasource_configs/ols.json index 181610a..6b63edc 100644 --- a/configs/datasource_configs/ols.json +++ b/configs/datasource_configs/ols.json @@ -6,7 +6,8 @@ "ingest_files": ["/nfs/production/parkinso/spot/grebi/ontologies.json.gz"], "ingest_script": "./target/release/grebi_ingest_ols", "ingest_args": [ - { "name": "--ontologies", "value": "efo,mp,hp,go,ro,iao,uberon,pato,oba,chebi,bspo,iao,obi,bfo,cob,cl,so,eco,pr,ncbitaxon,oio,iao,biolink,mondo,doid" } + { "name": "--ontologies", "value": "efo,mp,hp,go,ro,iao,uberon,pato,oba,chebi,bspo,iao,obi,bfo,cob,cl,so,eco,pr,ncbitaxon,oio,iao,biolink,mondo,doid" }, + { "name": "--skip-obsolete", "value": "" } ] } ]