diff --git a/tests/e2e/setup.sh b/tests/e2e/setup.sh
index e1b18a6d..d74897e4 100755
--- a/tests/e2e/setup.sh
+++ b/tests/e2e/setup.sh
@@ -4,6 +4,8 @@ set -euo pipefail
 
 TEST_NAME="setup file"
 TEST_CONFIG_DIR="./temp-config-dir"
+export DOPPLER_PROJECT=""
+export DOPPLER_CONFIG=""
 
 cleanup() {
   exit_code=$?
@@ -93,14 +95,14 @@ set timeout 2
 
 set has_failed "1"
 
-spawn $DOPPLER_BINARY setup --config-dir=$TEST_CONFIG_DIR 2>/dev/null
-
-expect "Selected only available project: cli"
-
-expect "Selected only available config: e2e"
+spawn $DOPPLER_BINARY setup --config-dir=$TEST_CONFIG_DIR
 
 expect {
   "NAME" { set has_failed "0" }
+  eof {
+      # The spawn command has completed, print the output
+      puts \$expect_out(buffer)
+  }
 }
 
 if { \$has_failed == "1" } {
@@ -269,9 +271,9 @@ flags:
   update-check: false
 EOF
 "$DOPPLER_BINARY" setup --config-dir=$TEST_CONFIG_DIR --no-interactive
-[[ "$("$DOPPLER_BINARY" configure flags get analytics --plain)" == 'false' ]] || error "ERROR: setup not setting disabled value for analytics"
-[[ "$("$DOPPLER_BINARY" configure flags get env-warning --plain)" == 'false' ]] || error "ERROR: setup not setting disabled value for env-warning"
-[[ "$("$DOPPLER_BINARY" configure flags get update-check --plain)" == 'false' ]] || error "ERROR: setup not setting disabled value for update-check"
+[[ "$("$DOPPLER_BINARY" configure flags get analytics --config-dir=$TEST_CONFIG_DIR --plain)" == 'false' ]] || error "ERROR: setup not setting disabled value for analytics"
+[[ "$("$DOPPLER_BINARY" configure flags get env-warning --config-dir=$TEST_CONFIG_DIR --plain)" == 'false' ]] || error "ERROR: setup not setting disabled value for env-warning"
+[[ "$("$DOPPLER_BINARY" configure flags get update-check --config-dir=$TEST_CONFIG_DIR --plain)" == 'false' ]] || error "ERROR: setup not setting disabled value for update-check"
 
 afterEach