From 6ab1b750ed95b2437b13e56a8c798d6deacc86f6 Mon Sep 17 00:00:00 2001 From: "J. Allen Baron" Date: Fri, 28 Jun 2024 11:47:09 -0400 Subject: [PATCH] Revise 'umbilical hernia' and omphalocele mappings Also contacted UMLS to fix incorrect conflation of these terms in UMLS and MeSH. Prompted by #1344 --- src/ontology/doid-edit.owl | 32 +++++++++++++++++++++----------- 1 file changed, 21 insertions(+), 11 deletions(-) diff --git a/src/ontology/doid-edit.owl b/src/ontology/doid-edit.owl index 4cb160e6..63e35bc9 100644 --- a/src/ontology/doid-edit.owl +++ b/src/ontology/doid-edit.owl @@ -32539,18 +32539,22 @@ SubClassOf(obo:DOID_0060320 obo:DOID_5295) AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://www.mayoclinic.org/diseases-conditions/umbilical-hernia/basics/definition/con-20025630") Annotation(oboInOwl:hasDbXref "url:https://en.wikipedia.org/wiki/Umbilical_hernia") obo:IAO_0000115 obo:DOID_0060321 "A intestinal disease characterized by the protrusion by part of the intestine though an opening in the abdominal muscles."@en) AnnotationAssertion(oboInOwl:created_by obo:DOID_0060321 "emitraka") AnnotationAssertion(oboInOwl:creation_date obo:DOID_0060321 "2015-02-25T15:58:35Z") -AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "ICD10CM:Q79.2") -AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "ICD9CM:756.72") -AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "MESH:D006554") -AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "NCI:C98997") +AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "ICD10CM:K42") +AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "ICD9CM:553.1") +AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "NCI:C118375") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "SNOMEDCT_US_2023_03_01:49324006") -AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "SNOMEDCT_US_2023_03_01:5867007") -AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "UMLS_CUI:C0795690") -AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "UMLS_CUI:C1306503") +AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "UMLS_CUI:C0019322") AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0060321 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_0060321 "DOID:0060321") AnnotationAssertion(oboInOwl:inSubset obo:DOID_0060321 doid:NCIthesaurus) AnnotationAssertion(rdfs:label obo:DOID_0060321 "umbilical hernia"@en) +AnnotationAssertion(skos:broadMatch obo:DOID_0060321 "MESH:D006554") +AnnotationAssertion(skos:exactMatch obo:DOID_0060321 "ICD10CM:K42") +AnnotationAssertion(skos:exactMatch obo:DOID_0060321 "ICD9CM:553.1") +AnnotationAssertion(skos:exactMatch obo:DOID_0060321 "NCI:C118375") +AnnotationAssertion(skos:exactMatch obo:DOID_0060321 "SNOMEDCT_US_2023_03_01:49324006") +AnnotationAssertion(skos:exactMatch obo:DOID_0060321 "UMLS_CUI:C0019322") +AnnotationAssertion(skos:narrowMatch obo:DOID_0060321 "ICD9CM:551.1") SubClassOf(obo:DOID_0060321 obo:DOID_5295) # Class: obo:DOID_0060322 (mastoiditis) @@ -32634,19 +32638,25 @@ AnnotationAssertion(oboInOwl:created_by obo:DOID_0060327 "emitraka") AnnotationAssertion(oboInOwl:creation_date obo:DOID_0060327 "2015-02-25T17:54:05Z") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "ICD10CM:Q79.2") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "ICD9CM:756.72") -AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "MESH:D006554") -AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "MIM:164750") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "NCI:C98997") -AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "SNOMEDCT_US_2023_03_01:49324006") +AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "ORDO:660") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "SNOMEDCT_US_2023_03_01:5867007") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "UMLS_CUI:C0795690") -AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "UMLS_CUI:C1306503") AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0060327 "exomphalos"@en) AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0060327 "omphalocoele"@en) AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0060327 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_0060327 "DOID:0060327") AnnotationAssertion(oboInOwl:inSubset obo:DOID_0060327 doid:NCIthesaurus) AnnotationAssertion(rdfs:label obo:DOID_0060327 "omphalocele"@en) +AnnotationAssertion(skos:broadMatch obo:DOID_0060327 "MESH:D006554") +AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "ICD10CM:Q79.2") +AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "ICD9CM:756.72") +AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "NCI:C98997") +AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "ORDO:660") +AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "SNOMEDCT_US_2023_03_01:5867007") +AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "UMLS_CUI:C0795690") +AnnotationAssertion(skos:narrowMatch obo:DOID_0060327 "MIM:164750") +AnnotationAssertion(skos:narrowMatch obo:DOID_0060327 "MIM:310980") SubClassOf(obo:DOID_0060327 obo:DOID_0080015) # Class: obo:DOID_0060328 (anal fistula)