From e0a89f704bbb48d3af74e61cc2e955075edbe14b Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Wed, 27 Mar 2024 16:02:12 +0100 Subject: [PATCH] Drop runtime stuff I guess https://github.com/galaxyproject/galaxy/pull/17678 wasn't enough. --- .../Purge-duplicate-contigs-VGP6.ga | 156 ++---------------- 1 file changed, 16 insertions(+), 140 deletions(-) diff --git a/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP6.ga b/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP6.ga index 9f69032c0..633ae824c 100644 --- a/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP6.ga +++ b/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP6.ga @@ -303,16 +303,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool Map with minimap2", - "name": "fastq_input" - }, - { - "description": "runtime parameter for tool Map with minimap2", - "name": "reference_source" - } - ], + "inputs": [], "label": null, "name": "Map with minimap2", "outputs": [ @@ -364,12 +355,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - } - ], + "inputs": [], "label": null, "name": "Purge overlaps", "outputs": [ @@ -510,16 +496,7 @@ "output_name": "split_fasta" } }, - "inputs": [ - { - "description": "runtime parameter for tool Map with minimap2", - "name": "fastq_input" - }, - { - "description": "runtime parameter for tool Map with minimap2", - "name": "reference_source" - } - ], + "inputs": [], "label": null, "name": "Map with minimap2", "outputs": [ @@ -739,12 +716,7 @@ "output_name": "integer_param" } }, - "inputs": [ - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - } - ], + "inputs": [], "label": null, "name": "Purge overlaps", "outputs": [ @@ -865,20 +837,7 @@ "output_name": "alignment_output" } }, - "inputs": [ - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - }, - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - }, - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - } - ], + "inputs": [], "label": null, "name": "Purge overlaps", "outputs": [ @@ -940,16 +899,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - }, - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - } - ], + "inputs": [], "label": null, "name": "Purge overlaps", "outputs": [ @@ -1081,16 +1031,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool Busco", - "name": "input" - }, - { - "description": "runtime parameter for tool Busco", - "name": "lineage" - } - ], + "inputs": [], "label": null, "name": "Busco", "outputs": [ @@ -1201,12 +1142,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool gfastats", - "name": "mode_condition" - } - ], + "inputs": [], "label": null, "name": "gfastats", "outputs": [ @@ -1361,16 +1297,7 @@ "output_name": "out_file1" } }, - "inputs": [ - { - "description": "runtime parameter for tool Map with minimap2", - "name": "fastq_input" - }, - { - "description": "runtime parameter for tool Map with minimap2", - "name": "reference_source" - } - ], + "inputs": [], "label": null, "name": "Map with minimap2", "outputs": [ @@ -1424,12 +1351,7 @@ "output_name": "out_file1" } }, - "inputs": [ - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - } - ], + "inputs": [], "label": null, "name": "Purge overlaps", "outputs": [ @@ -1911,12 +1833,7 @@ "output_name": "integer_param" } }, - "inputs": [ - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - } - ], + "inputs": [], "label": null, "name": "Purge overlaps", "outputs": [ @@ -2040,16 +1957,7 @@ "output_name": "split_fasta" } }, - "inputs": [ - { - "description": "runtime parameter for tool Map with minimap2", - "name": "fastq_input" - }, - { - "description": "runtime parameter for tool Map with minimap2", - "name": "reference_source" - } - ], + "inputs": [], "label": null, "name": "Map with minimap2", "outputs": [ @@ -2111,20 +2019,7 @@ "output_name": "alignment_output" } }, - "inputs": [ - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - }, - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - }, - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - } - ], + "inputs": [], "label": null, "name": "Purge overlaps", "outputs": [ @@ -2186,16 +2081,7 @@ "output_name": "out_file1" } }, - "inputs": [ - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - }, - { - "description": "runtime parameter for tool Purge overlaps", - "name": "function_select" - } - ], + "inputs": [], "label": null, "name": "Purge overlaps", "outputs": [ @@ -2372,12 +2258,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool Merqury", - "name": "mode" - } - ], + "inputs": [], "label": null, "name": "Merqury", "outputs": [ @@ -2507,12 +2388,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool gfastats", - "name": "mode_condition" - } - ], + "inputs": [], "label": null, "name": "gfastats", "outputs": [