diff --git a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml
index e0f853eb5..3f710d1f5 100644
--- a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml
+++ b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml
@@ -2,16 +2,20 @@
   job:
     Scaffolded assembly (fasta):
       class: File
-      location: https://zenodo.org/records/10067431/files/Scaffolded_assembly.fasta?download=1
+      location: https://zenodo.org/records/13326708/files/Scaffolded_assembly.fasta?download=1
       filetype: fasta
-    Database for Kraken2: viral2019-03
+    Database for Kraken2: k2_pluspf_20210517
   outputs:
-    full contaminant + mito scaffold list:
-      file: test-data/full contaminant + mito scaffold list.txt
-      compare: diff
-      sort: true
+    mito_scaff_names:
+      asserts:
+        has_text: 
+          text: "SCAFFOLD_82"
     final decontaminated assembly:
       decompress: true
       asserts:
         not_has_text: 
-          text: "_1100"
+          text: "scaffold_115"
+    contaminants_table:
+      asserts:
+        has_text: 
+          text: "SCAFFOLD_101"
diff --git a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9.ga b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9.ga
index b83991631..becfb8caa 100644
--- a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9.ga
+++ b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9.ga
@@ -11,8 +11,11 @@
     ],
     "format-version": "0.1",
     "license": "BSD-3-Clause",
-    "release": "0.1.6",
+    "release": "0.2",
     "name": "Assembly-decontamination-VGP9",
+    "report": {
+        "markdown": "\n# Workflow Execution Report\n\n### Worflow ran on: \n\n```galaxy\ninvocation_time()\n```\n\n# List of contaminants\n\n\r\n```galaxy\nhistory_dataset_as_table(output=\"contaminants_table\")\n```\r\n\n\n# List of Mitochondrial scaffolds\n\r\n```galaxy\nhistory_dataset_as_table(output=\"mito_scaff_names\")\n```\r\n\n\n\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n"
+    },
     "steps": {
         "0": {
             "annotation": "",
@@ -31,7 +34,7 @@
             "outputs": [],
             "position": {
                 "left": 0,
-                "top": 431.99609375
+                "top": 579.578125
             },
             "tool_id": null,
             "tool_state": "{\"optional\": false, \"format\": [\"fasta\"], \"tag\": null}",
@@ -58,7 +61,7 @@
             "outputs": [],
             "position": {
                 "left": 72.984375,
-                "top": 545.19140625
+                "top": 692.7734375
             },
             "tool_id": null,
             "tool_state": "{\"restrictOnConnections\": true, \"parameter_type\": \"text\", \"optional\": false}",
@@ -70,7 +73,7 @@
                 {
                     "label": null,
                     "output_name": "output",
-                    "uuid": "342dd6ab-f498-4a16-805f-3b7761497e91"
+                    "uuid": "9b1c5517-60c3-49b5-9e9e-f85e883b6a5f"
                 }
             ]
         },
@@ -95,8 +98,8 @@
                 }
             ],
             "position": {
-                "left": 342.8125,
-                "top": 227.6796875
+                "left": 342.8124888681364,
+                "top": 375.78555810947694
             },
             "post_job_actions": {
                 "ChangeDatatypeActionoutput": {
@@ -105,6 +108,11 @@
                     },
                     "action_type": "ChangeDatatypeAction",
                     "output_name": "output"
+                },
+                "HideDatasetActionoutput": {
+                    "action_arguments": {},
+                    "action_type": "HideDatasetAction",
+                    "output_name": "output"
                 }
             },
             "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy1",
@@ -143,9 +151,15 @@
             ],
             "position": {
                 "left": 652.953125,
-                "top": 176.06640625
+                "top": 323.6484375
+            },
+            "post_job_actions": {
+                "HideDatasetActionoutfile": {
+                    "action_arguments": {},
+                    "action_type": "HideDatasetAction",
+                    "output_name": "outfile"
+                }
             },
-            "post_job_actions": {},
             "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_dustmasker_wrapper/2.14.1+galaxy2",
             "tool_shed_repository": {
                 "changeset_revision": "cbf3f518b668",
@@ -181,8 +195,8 @@
                 }
             ],
             "position": {
-                "left": 972.0078125,
-                "top": 207.47265625
+                "left": 972.0000745777726,
+                "top": 355.5823870316441
             },
             "post_job_actions": {
                 "ChangeDatatypeActionoutput": {
@@ -191,6 +205,11 @@
                     },
                     "action_type": "ChangeDatatypeAction",
                     "output_name": "output"
+                },
+                "HideDatasetActionoutput": {
+                    "action_arguments": {},
+                    "action_type": "HideDatasetAction",
+                    "output_name": "output"
                 }
             },
             "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy1",
@@ -241,7 +260,7 @@
             ],
             "position": {
                 "left": 1372.5625,
-                "top": 0
+                "top": 147.58203125
             },
             "post_job_actions": {
                 "HideDatasetActionunclassified_out_s": {
@@ -292,7 +311,7 @@
             ],
             "position": {
                 "left": 1365.8984375,
-                "top": 392.03515625
+                "top": 539.6171875
             },
             "post_job_actions": {},
             "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.14.1+galaxy2",
@@ -311,9 +330,48 @@
         },
         "7": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1",
+            "content_id": "Cut1",
             "errors": null,
             "id": 7,
+            "input_connections": {
+                "input": {
+                    "id": 5,
+                    "output_name": "output"
+                }
+            },
+            "inputs": [],
+            "label": null,
+            "name": "Cut",
+            "outputs": [
+                {
+                    "name": "out_file1",
+                    "type": "tabular"
+                }
+            ],
+            "position": {
+                "left": 1727.19921875,
+                "top": 53.078125
+            },
+            "post_job_actions": {
+                "HideDatasetActionout_file1": {
+                    "action_arguments": {},
+                    "action_type": "HideDatasetAction",
+                    "output_name": "out_file1"
+                }
+            },
+            "tool_id": "Cut1",
+            "tool_state": "{\"columnList\": \"c1,c2,c3\", \"delimiter\": \"T\", \"input\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_version": "1.0.2",
+            "type": "tool",
+            "uuid": "bb39eb8b-cad8-44f1-aa56-64a11d985e3c",
+            "when": null,
+            "workflow_outputs": []
+        },
+        "8": {
+            "annotation": "",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1",
+            "errors": null,
+            "id": 8,
             "input_connections": {
                 "infile": {
                     "id": 5,
@@ -331,9 +389,15 @@
             ],
             "position": {
                 "left": 1727.8671875,
-                "top": 57.37109375
+                "top": 204.953125
+            },
+            "post_job_actions": {
+                "HideDatasetActionoutput": {
+                    "action_arguments": {},
+                    "action_type": "HideDatasetAction",
+                    "output_name": "output"
+                }
             },
-            "post_job_actions": {},
             "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1",
             "tool_shed_repository": {
                 "changeset_revision": "fbf99087e067",
@@ -348,11 +412,11 @@
             "when": null,
             "workflow_outputs": []
         },
-        "8": {
+        "9": {
             "annotation": "",
             "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/parse_mito_blast/parse_mito_blast/1.0.2+galaxy0",
             "errors": null,
-            "id": 8,
+            "id": 9,
             "input_connections": {
                 "blastout": {
                     "id": 6,
@@ -374,7 +438,7 @@
             ],
             "position": {
                 "left": 1741,
-                "top": 369.26171875
+                "top": 516.84375
             },
             "post_job_actions": {},
             "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/parse_mito_blast/parse_mito_blast/1.0.2+galaxy0",
@@ -389,16 +453,74 @@
             "type": "tool",
             "uuid": "4350e47a-2394-4381-a274-e238985195df",
             "when": null,
-            "workflow_outputs": []
+            "workflow_outputs": [
+                {
+                    "label": "mito_scaff_names",
+                    "output_name": "mito_scaff_names",
+                    "uuid": "1478af1e-52f4-48fe-b966-0a61e2014a58"
+                }
+            ]
         },
-        "9": {
+        "10": {
+            "annotation": "",
+            "content_id": "Filter1",
+            "errors": null,
+            "id": 10,
+            "input_connections": {
+                "input": {
+                    "id": 7,
+                    "output_name": "out_file1"
+                }
+            },
+            "inputs": [],
+            "label": null,
+            "name": "Filter",
+            "outputs": [
+                {
+                    "name": "out_file1",
+                    "type": "input"
+                }
+            ],
+            "position": {
+                "left": 2074.40625,
+                "top": 0
+            },
+            "post_job_actions": {
+                "HideDatasetActionout_file1": {
+                    "action_arguments": {},
+                    "action_type": "HideDatasetAction",
+                    "output_name": "out_file1"
+                },
+                "RenameDatasetActionout_file1": {
+                    "action_arguments": {
+                        "newname": "List of contaminants"
+                    },
+                    "action_type": "RenameDatasetAction",
+                    "output_name": "out_file1"
+                }
+            },
+            "tool_id": "Filter1",
+            "tool_state": "{\"cond\": \"c1!='U'\", \"header_lines\": \"0\", \"input\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_version": "1.1.1",
+            "type": "tool",
+            "uuid": "f5d80335-9b98-40ca-b706-4bb54d9801e6",
+            "when": null,
+            "workflow_outputs": [
+                {
+                    "label": "contaminants_table",
+                    "output_name": "out_file1",
+                    "uuid": "64156e28-aaf0-4578-9a7e-d6d21774c2c8"
+                }
+            ]
+        },
+        "11": {
             "annotation": "",
             "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy1",
             "errors": null,
-            "id": 9,
+            "id": 11,
             "input_connections": {
                 "infile": {
-                    "id": 7,
+                    "id": 8,
                     "output_name": "output"
                 }
             },
@@ -413,7 +535,7 @@
             ],
             "position": {
                 "left": 2061.3515625,
-                "top": 85.98828125
+                "top": 233.5703125
             },
             "post_job_actions": {
                 "ChangeDatatypeActionoutput": {
@@ -422,6 +544,11 @@
                     },
                     "action_type": "ChangeDatatypeAction",
                     "output_name": "output"
+                },
+                "HideDatasetActionoutput": {
+                    "action_arguments": {},
+                    "action_type": "HideDatasetAction",
+                    "output_name": "output"
                 }
             },
             "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy1",
@@ -438,14 +565,14 @@
             "when": null,
             "workflow_outputs": []
         },
-        "10": {
+        "12": {
             "annotation": "",
             "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy1",
             "errors": null,
-            "id": 10,
+            "id": 12,
             "input_connections": {
                 "infile": {
-                    "id": 8,
+                    "id": 9,
                     "output_name": "mito_scaff_names"
                 }
             },
@@ -460,9 +587,15 @@
             ],
             "position": {
                 "left": 2259.0390625,
-                "top": 370.75390625
+                "top": 518.3359375
+            },
+            "post_job_actions": {
+                "HideDatasetActionoutput": {
+                    "action_arguments": {},
+                    "action_type": "HideDatasetAction",
+                    "output_name": "output"
+                }
             },
-            "post_job_actions": {},
             "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy1",
             "tool_shed_repository": {
                 "changeset_revision": "fbf99087e067",
@@ -477,14 +610,14 @@
             "when": null,
             "workflow_outputs": []
         },
-        "11": {
+        "13": {
             "annotation": "",
             "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1",
             "errors": null,
-            "id": 11,
+            "id": 13,
             "input_connections": {
                 "infile": {
-                    "id": 9,
+                    "id": 11,
                     "output_name": "output"
                 }
             },
@@ -499,9 +632,15 @@
             ],
             "position": {
                 "left": 2321.61328125,
-                "top": 195.1875
+                "top": 342.76953125
+            },
+            "post_job_actions": {
+                "HideDatasetActionoutfile": {
+                    "action_arguments": {},
+                    "action_type": "HideDatasetAction",
+                    "output_name": "outfile"
+                }
             },
-            "post_job_actions": {},
             "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1",
             "tool_shed_repository": {
                 "changeset_revision": "fbf99087e067",
@@ -509,26 +648,26 @@
                 "owner": "bgruening",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"caseinsensitive\": \"false\", \"find_and_replace\": [], \"find_pattern\": \"kraken:taxid\\\\|[0-9]+\", \"global\": \"true\", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"is_regex\": \"true\", \"replace_pattern\": \"\", \"searchwhere\": {\"__current_case__\": 0, \"searchwhere_select\": \"line\"}, \"skip_first_line\": \"false\", \"wholewords\": \"true\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_state": "{\"find_and_replace\": [{\"__index__\": 0, \"find_pattern\": \" kraken:taxid\\\\|[0-9]+\", \"replace_pattern\": null, \"is_regex\": true, \"global\": true, \"caseinsensitive\": false, \"wholewords\": true, \"skip_first_line\": false, \"searchwhere\": {\"searchwhere_select\": \"line\", \"__current_case__\": 0}}], \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "9.3+galaxy1",
             "type": "tool",
             "uuid": "c37db543-a966-4ed2-88b9-87b317465144",
             "when": null,
             "workflow_outputs": []
         },
-        "12": {
+        "14": {
             "annotation": "",
             "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy1",
             "errors": null,
-            "id": 12,
+            "id": 14,
             "input_connections": {
                 "inputs": [
                     {
-                        "id": 10,
+                        "id": 12,
                         "output_name": "output"
                     },
                     {
-                        "id": 11,
+                        "id": 13,
                         "output_name": "outfile"
                     }
                 ]
@@ -544,7 +683,7 @@
             ],
             "position": {
                 "left": 2611.0546875,
-                "top": 276.36328125
+                "top": 423.9453125
             },
             "post_job_actions": {},
             "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy1",
@@ -567,18 +706,18 @@
                 }
             ]
         },
-        "13": {
+        "15": {
             "annotation": "",
             "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0",
             "errors": null,
-            "id": 13,
+            "id": 15,
             "input_connections": {
                 "input_file": {
                     "id": 0,
                     "output_name": "output"
                 },
                 "target_condition|exclude_bed": {
-                    "id": 12,
+                    "id": 14,
                     "output_name": "out_file1"
                 }
             },
@@ -593,7 +732,7 @@
             ],
             "position": {
                 "left": 3050.21875,
-                "top": 650.49609375
+                "top": 798.078125
             },
             "post_job_actions": {},
             "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0",
@@ -620,6 +759,6 @@
     "tags": [
         "VGP_curated"
     ],
-    "uuid": "f6d8df21-f1dc-493c-bfab-e2cbecb8873d",
-    "version": 1
-}
+    "uuid": "3f6673a2-caf4-4156-b5da-cc6bde2ddc8d",
+    "version": 8
+}
\ No newline at end of file
diff --git a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/CHANGELOG.md b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/CHANGELOG.md
index 3414f50e8..ee2feefeb 100644
--- a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/CHANGELOG.md
+++ b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/CHANGELOG.md
@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.2] 2024-08-15
+
+- Bug Fix: a missing regex caused the list of contaminants to empty out and the contaminants were not removed. 
+
 ## [0.1.6] 2024-06-10
 
 ### Automatic update
diff --git a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/test-data/full contaminant + mito scaffold list.txt b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/test-data/full contaminant + mito scaffold list.txt
deleted file mode 100644
index 50433e8b3..000000000
--- a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/test-data/full contaminant + mito scaffold list.txt	
+++ /dev/null
@@ -1,2 +0,0 @@
-scaffold_1058
-scaffold_1100