From 443d70daa0110b7470ed5c7017113d8c6414f619 Mon Sep 17 00:00:00 2001 From: Delphine Lariviere Date: Thu, 15 Aug 2024 11:01:13 -0400 Subject: [PATCH] change test to use a smaller database --- .../Assembly-decontamination-VGP9-tests.yml | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml index 3f710d1f5..84faabea1 100644 --- a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml +++ b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml @@ -2,9 +2,9 @@ job: Scaffolded assembly (fasta): class: File - location: https://zenodo.org/records/13326708/files/Scaffolded_assembly.fasta?download=1 + location: https://zenodo.org/records/13327557/files/Scaffolded_assembly.fasta?download=1 filetype: fasta - Database for Kraken2: k2_pluspf_20210517 + Database for Kraken2: viral2019-03 outputs: mito_scaff_names: asserts: @@ -14,8 +14,8 @@ decompress: true asserts: not_has_text: - text: "scaffold_115" + text: "scaffold_200" contaminants_table: asserts: has_text: - text: "SCAFFOLD_101" + text: "SCAFFOLD_200"