From e0f8fc3f4a60234996725810a9be3d0ec6782f1d Mon Sep 17 00:00:00 2001 From: Ajay Date: Mon, 21 Mar 2022 14:07:41 -0500 Subject: [PATCH] V3.7.0 (#551) * Google login --- package-lock.json | 6198 +++++++++-------- package.json | 7 +- public/index.html | 74 +- public/injectEnv.js | 2 + public/js/session.js | 34 + src/bento/dashboardData.js | 6 +- src/bento/dashboardTabData.js | 4 + src/bento/fileCentricCartWorkflowData.js | 17 - src/bento/globalData.js | 4 - src/bento/landingPageData.js | 4 +- src/bento/navigationBarData.js | 8 +- src/bento/programDetailData.js | 2 +- src/bento/siteWideConfig.js | 8 + .../ActiveFiltersQuery/ActiveFiltersQuery.js | 5 +- src/components/App.js | 17 +- .../DocumentDownload/DocumentDownloadView.js | 103 +- src/components/FileUploader/index.jsx | 8 +- src/components/FileUploader/uploaderStyle.js | 11 +- .../GoogleAuth/GoogleAuthProvider.js | 105 + .../components/afterSignInComponent.js | 107 + src/components/GoogleAuth/loginComponent.js | 60 + .../GoogleAuth/state/loginReducer.js | 58 + src/components/GoogleAuth/wrapRootElement.js | 6 + src/components/Layout/LayoutView.js | 2 +- src/components/NavBar/NavBarView.js | 25 +- .../CasesModal/SummaryTable.js | 108 +- .../SideBarComponents/CasesModal/index.js | 126 +- .../SideBar/SideBarComponents/FacetFilters.js | 293 +- .../SideBar/SideBarComponents/clearFilters.js | 4 +- .../SideBarComponents/searchComponet.js | 8 +- .../styles/FacetFiltersStyles.js | 3 +- .../styles/searchComponentStyles.js | 10 +- .../serverPaginatedTable.js | 167 +- src/components/sessionTimeOutModal/index.js | 149 + src/pages/armDetail/armDetailView.js | 4 +- src/pages/caseDetail/caseDetailView.js | 4 +- src/pages/dashboardTab/components/tabView.js | 3 +- .../dashboardTab/store/dashboardReducer.js | 20 +- src/pages/fileCentricCart/cartController.js | 8 +- src/pages/fileCentricCart/cartView.js | 4 +- src/pages/programDetail/programDetailView.js | 4 +- src/pages/programs/programsView.js | 4 +- 42 files changed, 4552 insertions(+), 3242 deletions(-) create mode 100644 public/js/session.js delete mode 100644 src/bento/globalData.js create mode 100644 src/bento/siteWideConfig.js create mode 100644 src/components/GoogleAuth/GoogleAuthProvider.js create mode 100644 src/components/GoogleAuth/components/afterSignInComponent.js create mode 100644 src/components/GoogleAuth/loginComponent.js create mode 100644 src/components/GoogleAuth/state/loginReducer.js create mode 100644 src/components/GoogleAuth/wrapRootElement.js create mode 100644 src/components/sessionTimeOutModal/index.js diff --git a/package-lock.json b/package-lock.json index d1c7bc149..222219bb4 100644 --- a/package-lock.json +++ b/package-lock.json @@ -11,7 +11,9 @@ "@apollo/react-components": "^4.0.0", "@babel/core": "7.2.2", "@jbrowse/react-linear-genome-view": "^1.3.0", + "@librpc/web": "^1.1.1", "@material-ui/core": "^4.10.0", + "@material-ui/data-grid": "*", "@material-ui/icons": "^4.9.1", "@material-ui/lab": "*", "@svgr/webpack": "4.1.0", @@ -22,7 +24,7 @@ "babel-loader": "8.0.5", "babel-plugin-named-asset-import": "^0.3.4", "babel-preset-react-app": "^7.0.1", - 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"https://registry.npmjs.org/zone.js/-/zone.js-0.11.5.tgz", + "integrity": "sha512-D1/7VxEuQ7xk6z/kAROe4SUbd9CzxY4zOwVGnGHerd/SgLIVU5f4esDzQUsOCeArn933BZfWMKydH7l7dPEp0g==", "peer": true, "requires": { - "tslib": "^2.0.0" + "tslib": "^2.3.0" }, "dependencies": { "tslib": { diff --git a/package.json b/package.json index 8504eeb30..bd553b266 100644 --- a/package.json +++ b/package.json @@ -7,7 +7,9 @@ "@apollo/react-components": "^4.0.0", "@babel/core": "7.2.2", "@jbrowse/react-linear-genome-view": "^1.3.0", + "@librpc/web": "^1.1.1", "@material-ui/core": "^4.10.0", + "@material-ui/data-grid": "*", "@material-ui/icons": "^4.9.1", "@material-ui/lab": "*", "@svgr/webpack": "4.1.0", @@ -18,7 +20,7 @@ "babel-loader": "8.0.5", "babel-plugin-named-asset-import": "^0.3.4", "babel-preset-react-app": "^7.0.1", - "bento-components": "^0.1.96", + "bento-components": "^0.1.105", "bfj": "6.1.1", "case-sensitive-paths-webpack-plugin": "2.2.0", "classnames": "^2.2.6", @@ -60,6 +62,7 @@ "react-dev-utils": "^7.0.3", "react-dom": "^16.8.2", "react-loading-skeleton": "^2.1.1", + "react-measure": "^2.5.2", "react-redux": "^7.2.1", "react-router": "^5.1.2", "react-router-dom": "^5.1.2", @@ -67,6 +70,7 @@ "react-swipeable-views": "^0.13.9", "react-syntax-highlighter": "^10.2.0", "react-toastify": "^4.5.2", + "react-use-googlelogin": "^0.12.5", "react-uuid": "^1.0.2", "react-vis": "^1.11.7", "react-zoom-pan-pinch": "^1.4.5", @@ -76,6 +80,7 @@ "redux-devtools-extension": "^2.13.9", "redux-logger": "^3.0.6", "redux-thunk": "^2.3.0", + "reselect": "^4.1.5", "resolve": "1.10.0", "sass-loader": "7.1.0", "style-loader": "0.23.1", diff --git a/public/index.html b/public/index.html index e18e56c94..9655cb8ff 100644 --- a/public/index.html +++ b/public/index.html @@ -1,43 +1,47 @@ - - - - - - - - - - - - - - - - - + - - + + - - Bento + Bento - - - - - -
- - - + + + \ No newline at end of file diff --git a/public/injectEnv.js b/public/injectEnv.js index d9ed07d9f..e1c0af500 100644 --- a/public/injectEnv.js +++ b/public/injectEnv.js @@ -3,6 +3,8 @@ window.injectedEnv = { REACT_APP_LOGIN_URL:'https://nci-crdc-staging.datacommons.io/user/oauth2/authorize?client_id=82pslYFJqA7auRvKYfTOK67jzQAMb8f6C33tlmZz&response_type=code&redirect_uri=https%3A%2F%2Fk9dc.essential-dev.com%2F&scope=openid%20user', REACT_APP_USER_LOGOUT_URL:'https://k9dc.essential-dev.com/fence/logout', REACT_APP_BACKEND_API:'https://bento-dev.bento-tools.org/v1/graphql/', + REACT_APP_AUTH_API:'http://localhost:4010', + REACT_APP_GOOGLE_CLIENT_ID:'', REACT_APP_APPLICATION_VERSION:'YYYY_MM_DD/HH:MM', REACT_APP_ABOUT_CONTENT_URL:'https://raw.githubusercontent.com/CBIIT/bento-frontend/master/src/content/dev/aboutPagesContent.yaml', REACT_APP_FILE_SERVICE_API:'https://bento-dev.bento-tools.org/api/files/', diff --git a/public/js/session.js b/public/js/session.js new file mode 100644 index 000000000..c19567c09 --- /dev/null +++ b/public/js/session.js @@ -0,0 +1,34 @@ +const sessionStorageTransfer = (event) => { + let $event = event; + if (!$event) { + $event = window.event; + } // ie suq + if (!$event.newValue) return; // do nothing if no value to work with + if ($event.key === 'getSessionStorage') { + // another tab asked for the sessionStorage -> send it + localStorage.setItem('sessionStorage', JSON.stringify(sessionStorage)); + // the other tab should now have it, so we're done with it. + localStorage.removeItem('sessionStorage'); // <- could do short timeout as well. + } else if ($event.key === 'sessionStorage' && !sessionStorage.length) { + // another tab sent data <- get it + const data = JSON.parse($event.newValue); + Object.keys(data).forEach((key) => { + sessionStorage.setItem(key, data[key]); + }); + } else if ($event.key === 'logout') { + sessionStorage.clear(); + } +}; + +// listen for changes to localStorage +if (window.addEventListener) { + window.addEventListener('storage', sessionStorageTransfer, false); +} else { + window.addEventListener('onstorage', sessionStorageTransfer); +} + +// Ask other tabs for session storage (this is ONLY to trigger 'storage' event) +if (!sessionStorage.length) { + localStorage.setItem('getSessionStorage', 'true'); + localStorage.removeItem('getSessionStorage'); +} diff --git a/src/bento/dashboardData.js b/src/bento/dashboardData.js index 601021346..8ee807f89 100644 --- a/src/bento/dashboardData.js +++ b/src/bento/dashboardData.js @@ -66,7 +66,7 @@ export const facetSectionVariables = { checkBoxColorsOne: '#E8F7DC', checkBoxColorsTwo: '#F5FDEE', height: '5px', - isExpanded: false, + isExpanded: true, }, Samples: { color: '#10BEFF', @@ -74,7 +74,7 @@ export const facetSectionVariables = { checkBoxColorsOne: '#C9EBF7', checkBoxColorsTwo: '#E8F8FE', height: '5px', - isExpanded: false, + isExpanded: true, }, Files: { color: '#E636E4', @@ -82,7 +82,7 @@ export const facetSectionVariables = { checkBoxColorsOne: '#FBE3FB', checkBoxColorsTwo: '#FFF2FF', height: '5px', - isExpanded: false, + isExpanded: true, }, }; diff --git a/src/bento/dashboardTabData.js b/src/bento/dashboardTabData.js index 142a4897e..4d56c4869 100644 --- a/src/bento/dashboardTabData.js +++ b/src/bento/dashboardTabData.js @@ -314,6 +314,8 @@ export const tabContainers = [ documentDownloadProps: { // Max file size needs to bin Bytes to seperate two support file preview and download maxFileSize: 315, + // Tool top text for Unauthenticated users + toolTipTextUnauthenticated: 'Login to access this file', // Tool top text for file download toolTipTextFileDownload: 'Download a copy of this file', // Tool top text for file preview @@ -326,6 +328,8 @@ export const tabContainers = [ fileFormatColumn: 'file_format', // datafield where file case id exists in the table which is used to get file information caseIdColumn: 'subject_id', + // Unauthenticated lock icon + iconUnauthenticated: 'https://raw.githubusercontent.com/CBIIT/datacommons-assets/main/bento/images/icons/svgs/Access_Lock.svg', // file download icon iconFileDownload: 'https://raw.githubusercontent.com/CBIIT/datacommons-assets/main/bento/images/icons/svgs/DocumentDownloadPDF.svg', // file preview icon diff --git a/src/bento/fileCentricCartWorkflowData.js b/src/bento/fileCentricCartWorkflowData.js index 3335841dd..6857858b2 100644 --- a/src/bento/fileCentricCartWorkflowData.js +++ b/src/bento/fileCentricCartWorkflowData.js @@ -115,20 +115,3 @@ query filesInList($file_ids: [String], $offset: Int = 0, $first: Int = 10, $orde md5sum } }`; - -// --------------- GraphQL query - Retrieve selected files info Desc -------------- -export const GET_MY_CART_DATA_QUERY_DESC = gql` -query filesInListDesc($file_ids: [String], $offset: Int = 0, $first: Int = 10, $order_by:String ="") { - filesInListDesc(file_ids: $file_ids, offset: $offset,first: $first, order_by: $order_by) { - study_code - subject_id - file_name - file_type - association - file_description - file_format - file_size - file_id - md5sum - } -}`; diff --git a/src/bento/globalData.js b/src/bento/globalData.js deleted file mode 100644 index 85e4c3983..000000000 --- a/src/bento/globalData.js +++ /dev/null @@ -1,4 +0,0 @@ -export default { - // Suggested for replaceEmptyValueWith: 'N/A' or '-' or '' - replaceEmptyValueWith: '', -}; diff --git a/src/bento/landingPageData.js b/src/bento/landingPageData.js index 7bdf29ddc..7d5456f0f 100644 --- a/src/bento/landingPageData.js +++ b/src/bento/landingPageData.js @@ -8,7 +8,7 @@ export const landingPageData = { callToActionTitle: 'Explore, Analyze, Visualize Clinical Trial Data Sets', callToActionDescription: 'Model, Store and Share your Data Sets using the Bento Framework for Data Sharing Platforms.', callToActionButtonText: 'EXPLORE THE SITE', - callToActionLink: '/cases', + callToActionLink: '/explore', landingPageHero: { alt: 'Alt tag1', img: 'https://raw.githubusercontent.com/CBIIT/datacommons-assets/main/bento/images/icons/png/landing_Hero_Graphic.png', @@ -65,7 +65,7 @@ export const landingPageData = { titleText: 'Cases', descriptionText: 'Analyze cases from the TAILORx clinical trial.', callToActionText: 'Explore', - callToActionLink: '/cases', // This links to the cases dashboard. + callToActionLink: '/explore', // This links to the cases dashboard. }, }; diff --git a/src/bento/navigationBarData.js b/src/bento/navigationBarData.js index 385303d4c..373828856 100644 --- a/src/bento/navigationBarData.js +++ b/src/bento/navigationBarData.js @@ -47,14 +47,14 @@ export const navBarData = [ link: '/home', }, { - labelText: 'programs', + labelText: 'explore', type: 'link', - link: '/programs', + link: '/explore', }, { - labelText: 'cases', + labelText: 'programs', type: 'link', - link: '/cases', + link: '/programs', }, { labelText: 'about', diff --git a/src/bento/programDetailData.js b/src/bento/programDetailData.js index 38bc213e1..b8f16b013 100644 --- a/src/bento/programDetailData.js +++ b/src/bento/programDetailData.js @@ -19,7 +19,7 @@ const breadCrumb = { const aggregateCount = { labelText: 'Cases', dataField: 'num_subjects', - link: '/cases', + link: '/explore', display: true, }; diff --git a/src/bento/siteWideConfig.js b/src/bento/siteWideConfig.js new file mode 100644 index 000000000..f84aaec62 --- /dev/null +++ b/src/bento/siteWideConfig.js @@ -0,0 +1,8 @@ +export default { + // Suggested for replaceEmptyValueWith: 'N/A' or '-' or '' + replaceEmptyValueWith: '', + // Enable authenication + enableAuthentication: true, + // List for options for authentication empty array defaults to google + authEndPoint: ['google'], // authEndPoint: [] +}; diff --git a/src/components/ActiveFiltersQuery/ActiveFiltersQuery.js b/src/components/ActiveFiltersQuery/ActiveFiltersQuery.js index a1e853598..526a41acc 100644 --- a/src/components/ActiveFiltersQuery/ActiveFiltersQuery.js +++ b/src/components/ActiveFiltersQuery/ActiveFiltersQuery.js @@ -370,13 +370,13 @@ const styles = () => ({ queryWrapper: { height: '120px', backgroundColor: '#f1f1f1', - padding: '14px 14px 0px 21px', + padding: '14px 14px 0px 35px', overflowY: 'auto', }, queryContainer: { marginLeft: 7, position: 'relative', - lineHeight: '2.2em', + lineHeight: '2.4em', letterSpacing: '0.5px', fontFamily: 'Nunito', fontSize: '14px', @@ -426,6 +426,7 @@ const styles = () => ({ }, clearQueryButton: { margin: '1px', + marginLeft: -6, fontWeight: 600, fontSize: '13px', color: '#fff', diff --git a/src/components/App.js b/src/components/App.js index 53280fbf2..93c1950c4 100644 --- a/src/components/App.js +++ b/src/components/App.js @@ -2,18 +2,23 @@ import React from 'react'; import { BrowserRouter, Route, Switch } from 'react-router-dom'; import Layout from './Layout/LayoutContainer'; import { CustomThemeProvider } from './ThemeContext'; +import { GoogleAuthProvider } from './GoogleAuth/GoogleAuthProvider'; // This is the place to check login ref to https://medium.com/@tomlarge/private-routes-with-react-router-dom-28e9f40c7146 for sample code const App = () => ( - {/* Reminder: Ajay need to replace the ICDC with env variable and + + + {/* Reminder: Ajay need to replace the ICDC with env variable and change build npm to read env variable */} - - - - - + + + + + + + ); diff --git a/src/components/DocumentDownload/DocumentDownloadView.js b/src/components/DocumentDownload/DocumentDownloadView.js index 135f6b134..e5bc16118 100644 --- a/src/components/DocumentDownload/DocumentDownloadView.js +++ b/src/components/DocumentDownload/DocumentDownloadView.js @@ -1,4 +1,5 @@ import React from 'react'; +import { useSelector } from 'react-redux'; import { withStyles, } from '@material-ui/core'; @@ -7,18 +8,31 @@ import { Link } from 'react-router-dom'; import env from '../../utils/env'; import CustomIcon from '../CustomIcon/CustomIconView'; import { jBrowseOptions } from '../../bento/jbrowseDetailData'; +import { useGoogleAuth } from '../GoogleAuth/GoogleAuthProvider'; +import globalData from '../../bento/siteWideConfig'; +import SessionTimeOutModal from '../sessionTimeOutModal'; const FILE_SERVICE_API = env.REACT_APP_FILE_SERVICE_API; -const fetchFileToDownload = (fileURL = '') => { +const fetchFileToDownload = (fileURL = '', signOut, setShowModal) => { fetch(`${FILE_SERVICE_API}${fileURL}`, { method: 'GET', headers: { 'Content-Type': 'application/pdf', }, }) - .then((response) => response.text()) - .then((filePath) => { + .then((response) => { + if (response.status === 403) { + // sign out && open modal + signOut(); + setShowModal(true); + return ''; + } + return response.text(); + }).then((filePath) => { + if (filePath === '') { + return; + } // Create blob link to download const link = document.createElement('a'); link.href = filePath; @@ -39,39 +53,72 @@ const DocumentDownload = ({ fileSize = 0, fileFormat = '', maxFileSize = 200000, + toolTipTextUnauthenticated = 'Login to access this file', toolTipTextFileDownload = 'Download a copy of this file', toolTipTextFilePreview = 'Because of its size and/or format, this file is unavailable for download and must be accessed via the My Files workflow', toolTipTextFileViewer = 'Jbrowse file viewer', iconFileDownload = '', iconFilePreview = '', iconFileViewer = '', + iconUnauthenticated = '', fileLocation = '', caseId = '', -}) => ( - <> - { (fileFormat === 'bam' || fileFormat === 'bai') && jBrowseOptions.jBrowse ? ( - - - - - - ) : fileSize < maxFileSize ? ( - -
fetchFileToDownload(fileLocation)}> - -
- - ) : ( - - - - - - )} - -); +}) => { + const { + signIn, + signOut, + } = useGoogleAuth(); + const isSignedIn = useSelector((state) => state.login.isSignedIn); + const [showModal, setShowModal] = React.useState(false); + + const closeModal = () => { + setShowModal(false); + }; + + return ( + <> +
+ { (globalData.enableAuthentication && !isSignedIn) ? ( + +
signIn()} + > + +
+ + ) : (fileFormat === 'bam' || fileFormat === 'bai') && jBrowseOptions.jBrowse ? ( + + + + + + ) : fileSize < maxFileSize ? ( + +
fetchFileToDownload(fileLocation, signOut, setShowModal)}> + +
+ + ) : ( + + + + + + )} + +
+ + ); +}; const styles = () => ({ customTooltip: { diff --git a/src/components/FileUploader/index.jsx b/src/components/FileUploader/index.jsx index 847276486..cc749cdf9 100644 --- a/src/components/FileUploader/index.jsx +++ b/src/components/FileUploader/index.jsx @@ -49,11 +49,15 @@ const Uploader = ({ className={classes.uploadInput} value="" /> - -
+
{ fileName ? ( diff --git a/src/components/FileUploader/uploaderStyle.js b/src/components/FileUploader/uploaderStyle.js index 65468e961..6841f6b83 100644 --- a/src/components/FileUploader/uploaderStyle.js +++ b/src/components/FileUploader/uploaderStyle.js @@ -8,10 +8,11 @@ const styles = () => ({ alignItems: 'center', }, uploaderComponent: { - height: '35px', - alignSelf: 'center', - marginRight: '10px', - marginBottom: '10px', + height: '38px', + width: '100%', + display: 'flex', + justifyContent: 'center', + marginBottom: '22px', }, fileName: { marginLeft: '101px', @@ -30,6 +31,8 @@ const styles = () => ({ position: 'absolute', backgroundColor: 'blue', marginBottom: '12px', + width: 143, + boxShadow: 'none', }, }); diff --git a/src/components/GoogleAuth/GoogleAuthProvider.js b/src/components/GoogleAuth/GoogleAuthProvider.js new file mode 100644 index 000000000..5e778ea27 --- /dev/null +++ b/src/components/GoogleAuth/GoogleAuthProvider.js @@ -0,0 +1,105 @@ +import React, { useContext } from 'react'; +import { useGoogleLogin } from 'react-use-googlelogin'; +import env from '../../utils/env'; +import { signInRed, signOutRed } from './state/loginReducer'; + +const AUTH_API = env.REACT_APP_AUTH_API; +const GOOGLE_CLIENT_ID = env.REACT_APP_GOOGLE_CLIENT_ID; + +const createContext = () => { + const ctx = React.createContext(); + const useCtx = () => { + const contextValue = useContext(ctx); + + if (contextValue === undefined) { throw new Error('useCtx must be inside a Provider with a value'); } + + return contextValue; + }; + + return [useCtx, ctx.Provider]; +}; +const [useGoogleAuth, AuthProvider] = createContext(); + +export const GoogleAuthProvider = ({ children }) => { + const { + googleUser, + isInitialized, + grantOfflineAccess, + signOut, + isSignedIn, + } = useGoogleLogin({ + clientId: GOOGLE_CLIENT_ID, + }); + + const onSignInClick = () => { + grantOfflineAccess().then((resp) => { + if (resp) { + // Hide the sign-in button now that the user is authorized, for example: + + // Send the code to the server + (async () => { + const rawResponse = await fetch(`${AUTH_API}/api/auth/login`, { + method: 'POST', + headers: { + Accept: 'application/json', + 'Content-Type': 'application/json', + }, + body: JSON.stringify({ code: resp }), + }).then((response) => response.json()).catch(() => { + }); + + if (!rawResponse) return; + const content = await rawResponse; + localStorage.setItem('username', content.name); + signInRed(content.name); + })(); + } else { + // There was an error. + } + }).catch(() => { + }); + // this.auth.signIn(); + }; + + const onSignOut = () => { + (async () => { + localStorage.removeItem('username'); + signOutRed(); + await fetch(`${AUTH_API}/api/auth/logout`, { + method: 'POST', + headers: { + Accept: 'application/json', + 'Content-Type': 'application/json', + }, + }).then(() => { + signOut(); + }) + .catch(() => { + }); + })(); + // this.auth.signIn(); + }; + + /** + * A wrapper function around `fetch` that handles automatically refreshing + * our `accessToken` if it is within 5 minutes of expiring. + * + * Behaves identically to `fetch` otherwise. + */ + + return ( + + {children} + + ); +}; +export { useGoogleAuth }; diff --git a/src/components/GoogleAuth/components/afterSignInComponent.js b/src/components/GoogleAuth/components/afterSignInComponent.js new file mode 100644 index 000000000..9cbb81266 --- /dev/null +++ b/src/components/GoogleAuth/components/afterSignInComponent.js @@ -0,0 +1,107 @@ +import React from 'react'; +import { + Button, withStyles, Paper, +} from '@material-ui/core'; +// import DropdownItemsMenu from './DropdownItemsMenu'; + +const AfterSignIn = ({ + classes, userName, signoutLink, +}) => { + const [displayDropDownMenu, setDisplayDropDownMenu] = React.useState(false); + + function handleClick() { + setDisplayDropDownMenu(true); + } + + function handleMoveOut() { + setDisplayDropDownMenu(false); + } + + // function dropdownMenuClickEvent() { + // setDisplayDropDownMenu(false); + // handleButtonClickEvent('aboutMenu'); + // } + + return ( +
+ + {displayDropDownMenu + ? ( + + + + ) : ''} +
+ ); +}; + +const styles = () => ({ + logotype: { + whiteSpace: 'nowrap', + color: '#FFFFFF', + fontFamily: 'Nunito', + fontSize: '13px', + fontWeight: '600', + letterSpacing: '0.9px', + // [theme.breakpoints.down('xs')]: { + // display: 'none', + // }, + '&:hover, &:focus': { + borderRadius: '0', + }, + }, + buttonRootNoRightPadding: { + padding: '9px 0px 0px 20px', + }, + buttonRootClicked: { + borderBottom: '2px solid #FFFFFF', + }, + dropDownicon: { + fontSize: '18px', + margin: '0px 0px 0px 0px', + }, + paddding0: { + paddding: '0px', + }, + aboutMenu: { + display: 'inline-block', + height: '39px', + }, + textColor: { + color: '#ffffff', + fontSize: '16px', + textTrasform: 'normal', + textTransform: 'capitalize', + }, + paper: { + background: '#465F96', + width: '120px', + paddingLeft: '20px', + position: 'absolute', + fontFamily: 'Nunito', + fontWeight: 600, + borderRadius: '0', + marginTop: '6px', + }, +}); + +AfterSignIn.defaultProps = { + navBarstyling: {}, +}; + +export default withStyles(styles)(AfterSignIn); diff --git a/src/components/GoogleAuth/loginComponent.js b/src/components/GoogleAuth/loginComponent.js new file mode 100644 index 000000000..fbe18d984 --- /dev/null +++ b/src/components/GoogleAuth/loginComponent.js @@ -0,0 +1,60 @@ +import React from 'react'; +import { + Button, + withStyles, +} from '@material-ui/core'; +import { useSelector } from 'react-redux'; +import { useGoogleAuth } from './GoogleAuthProvider'; +import AfterSignInComponent from './components/afterSignInComponent'; +import globalData from '../../bento/siteWideConfig'; + +// styles +const styles = () => ({ + + logotype: { + whiteSpace: 'nowrap', + color: '#FFFFFF', + fontFamily: 'Raleway', + fontSize: '13px', + letterSpacing: '1.25px', + fontWeight: '800', + '&:hover, &:focus': { + borderRadius: '0', + }, + }, + buttonRootNoRightPadding: { + padding: '9px 0px 0px 20px', + }, +}); + +const IndexPage = ({ classes }) => { + const { + signIn, signOut, + } = useGoogleAuth(); + // const classes = useStyles(); + const userName = useSelector((state) => state.login.userId); + const isSignedIn = useSelector((state) => state.login.isSignedIn); + + return ( + <> + {globalData.enableAuthentication && (typeof globalData.authEndPoint === 'undefined' || globalData.authEndPoint.includes('google') || globalData.authEndPoint.includes('Google') || globalData.authEndPoint === []) && ( + <> + { (isSignedIn && userName !== undefined && typeof userName !== 'undefined') ? ( + <> + + + ) : ( + + )} + + )} + + ); +}; + +export default withStyles(styles)(IndexPage); diff --git a/src/components/GoogleAuth/state/loginReducer.js b/src/components/GoogleAuth/state/loginReducer.js new file mode 100644 index 000000000..4fa42df27 --- /dev/null +++ b/src/components/GoogleAuth/state/loginReducer.js @@ -0,0 +1,58 @@ +import store from '../../../store'; + +const storeKey = 'login'; + +export const SIGN_IN = 'SIGN_IN'; +export const SIGN_OUT = 'SIGN_OUT'; + +export const loadState = () => { + try { + const serializedState = localStorage.getItem('username'); + + if (serializedState === null) { + return { + isSignedIn: false, + userId: null, + }; + } + return { + isSignedIn: true, + userId: serializedState, + }; + } catch (error) { + return { + isSignedIn: false, + userId: null, + }; + } +}; + +const initialState = loadState(); + +export const signInRed = (userId = null) => store.dispatch({ type: SIGN_IN, payload: userId }); + +// export function signInRed() { +// return { +// type: SIGN_OUT, +// }; +// } + +export const signOutRed = () => store.dispatch({ type: SIGN_OUT }); + +const reducers = { + SIGN_IN: + (state, item) => ({ ...state, isSignedIn: true, userId: item }), + SIGN_OUT: + (state) => ( + { + ...state, + isSignedIn: false, + userId: null, + } + ), + +}; + +// INJECT-REDUCERS INTO REDUX STORE +store.injectReducer(storeKey, (state = initialState, { type, payload }) => ( + reducers[type] ? reducers[type](state, payload) : state)); diff --git a/src/components/GoogleAuth/wrapRootElement.js b/src/components/GoogleAuth/wrapRootElement.js new file mode 100644 index 000000000..5d1d6132e --- /dev/null +++ b/src/components/GoogleAuth/wrapRootElement.js @@ -0,0 +1,6 @@ +import React from 'react'; +import { GoogleAuthProvider } from './GoogleAuthProvider'; + +const wrapRootElement = ({ element }) => {element}; + +export default wrapRootElement; diff --git a/src/components/Layout/LayoutView.js b/src/components/Layout/LayoutView.js index a457885d0..52705f799 100644 --- a/src/components/Layout/LayoutView.js +++ b/src/components/Layout/LayoutView.js @@ -45,7 +45,7 @@ const Layout = ({ classes, isSidebarOpened }) => ( - + diff --git a/src/components/NavBar/NavBarView.js b/src/components/NavBar/NavBarView.js index 26b374669..85b41f515 100644 --- a/src/components/NavBar/NavBarView.js +++ b/src/components/NavBar/NavBarView.js @@ -1,18 +1,29 @@ import React from 'react'; import { NavBar } from 'bento-components'; -// import { useSelector } from 'react-redux'; import { navBarData, navBarCartData, navBarstyling, } from '../../bento/navigationBarData'; +import Login from '../GoogleAuth/loginComponent'; +import globalData from '../../bento/siteWideConfig'; const BentoNavBar = ({ cartFieldIds }) => ( <> - + {globalData.enableAuthentication ? ( + + ) : ( + + ) } ); export default BentoNavBar; diff --git a/src/components/SideBar/SideBarComponents/CasesModal/SummaryTable.js b/src/components/SideBar/SideBarComponents/CasesModal/SummaryTable.js index b36e2622b..3d627bdc8 100644 --- a/src/components/SideBar/SideBarComponents/CasesModal/SummaryTable.js +++ b/src/components/SideBar/SideBarComponents/CasesModal/SummaryTable.js @@ -1,6 +1,5 @@ import React from 'react'; import { - Button, Divider, makeStyles, } from '@material-ui/core'; @@ -10,29 +9,43 @@ const useStyles = makeStyles(() => ({ tableContainer: { border: '1px solid #c1c1c1', width: '-webkit-fill-available', - marginBottom: 10, backgroundColor: '#fff', - padding: 13, + padding: 14, + marginBottom: 16, }, button: { fontSize: 12, fontWeight: 500, color: '#00387A', backgroundColor: '#fff', - borderBottom: '5px solid #00387A', + borderBottom: '4px solid #437bbe', + cursor: 'pointer', + padding: '11px 22px', + fontFamily: 'Lato', + textTransform: 'uppercase', }, unselectedButton: { fontSize: 12, fontWeight: 500, color: '#00387A', backgroundColor: '#DEE0E2', + cursor: 'pointer', + padding: '11px 22px', + fontFamily: 'Lato', + textTransform: 'uppercase', + }, + btnContainer: { + marginBottom: 14, }, summary: { color: '#0D4A94', fontSize: 14, textAlign: 'center', margin: 0, - paddingTop: 31, + paddingTop: 10, + fontFamily: 'Lato', + fontStyle: 'italic', + fontWeight: 'bold', }, title: { display: 'flex', @@ -40,9 +53,12 @@ const useStyles = makeStyles(() => ({ justifyContent: 'center', fontWeight: 300, color: '#000', + fontSize: 16, + fontFamily: 'Nunito', }, arrowRight: { color: '#437BBE', + fontSize: '2.5rem', }, summaryContainer: { backgroundColor: '#CCD4DD', @@ -53,25 +69,41 @@ const useStyles = makeStyles(() => ({ fontSize: 12, color: '#437BBE', textAlign: 'center', + paddingBottom: 10, + fontFamily: 'lato', + fontWeight: 100, + letterSpacing: 0.5, + }, + header: { + fontSize: 12, + color: '#437BBE', + textAlign: 'center', + fontFamily: 'lato', + paddingBottom: 10, + fontWeight: 100, + letterSpacing: 0.5, }, programHeading: { textAlign: 'center', }, divider: { backgroundColor: '#93C0F5', - width: '80%', + width: '100%', }, dividerContainer: { display: 'flex', justifyContent: 'center', }, + emptyCell: { + width: 20, + }, tableColumn: { color: '#0D8662', textAlign: 'center', }, tableBox: { maxHeight: 150, - overflowY: 'scroll', + overflowY: 'auto', }, } )); @@ -82,40 +114,60 @@ const SummaryTable = (props) => { const [isMatched, setIsMatched] = React.useState(true); return ( -
-

+

+

{`${matchedContent.length + unmatchedContent.length} submitted Case IDs mapped to ${matchedContent.length} unique Bento Case IDs`}

Summary Table

-
- - +
+ setIsMatched(true)} + id="uploadCaseSetMatched" + > + Matched -  + + {`${matchedContent.length}`} + + + setIsMatched(false)} + id="uploadCaseSetUnMatched" + > + Unmatched -  + + {`${unmatchedContent.length}`} + +
{isMatched ? ( matchedContent.length ? ( - - - - +
SUBMITTED CASE IDASSOCIATED PROGRAM
+ + + - + + {matchedContent.map((matched, id) => ( - - - + + + ))}
SUBMITTED CASE ID + ASSOCIATED PROGRAM
{matched.subject_id}{matched.program_id}
{matched.subject_id} + {matched.program_id}
@@ -123,12 +175,12 @@ const SummaryTable = (props) => { ) : ( unmatchedContent.length ? ( - - - +
SUBMITTED CASE ID
+ + {unmatchedContent.map((unmatched, id) => ( - + ))}
SUBMITTED CASE ID
{unmatched}{unmatched}
diff --git a/src/components/SideBar/SideBarComponents/CasesModal/index.js b/src/components/SideBar/SideBarComponents/CasesModal/index.js index 5d4afb578..9963ab871 100644 --- a/src/components/SideBar/SideBarComponents/CasesModal/index.js +++ b/src/components/SideBar/SideBarComponents/CasesModal/index.js @@ -2,12 +2,13 @@ import React from 'react'; import { Modal, Button, - Tooltip, makeStyles, Typography, TextareaAutosize, + IconButton, } from '@material-ui/core'; import HelpIcon from '@material-ui/icons/Help'; +import { ToolTip } from 'bento-components'; import { uploadBulkModalSearch, getAllSubjectIds, } from '../../../../pages/dashboardTab/store/dashboardReducer'; @@ -22,20 +23,28 @@ const useStyles = makeStyles((theme) => ({ justifyContent: 'center', }, paper: { - minWidth: '50%', + minWidth: '32%', borderRadius: '10px', border: '2px solid #000', boxShadow: theme.shadows[5], backgroundColor: theme.palette.background.paper, }, + closeIcon: { + cursor: 'pointer', + }, modalTitle: { + fontFamily: 'lato', borderBottom: '1px solid rgba(#000,0.3)', fontSize: 20, color: '#4D6787', - padding: '15px 33px', + padding: '16px 32px 12px 32px', margin: '0px', borderTopLeftRadius: 10, borderTopRightRadius: 10, + display: 'flex', + justifyContent: 'space-between', + alignItems: 'center', + fontWeight: 'bold', }, modalContainer: { display: 'flex', @@ -50,9 +59,9 @@ const useStyles = makeStyles((theme) => ({ justifyContent: 'center', }, uploadFile: { - width: '48%', + width: 315, border: '1px solid white', - margin: '10px 4px', + margin: '20px 4px', padding: 10, textAlign: 'center', }, @@ -62,19 +71,22 @@ const useStyles = makeStyles((theme) => ({ fontSize: 17, border: '1px solid #fff', borderRadius: '50%', - padding: 8, + padding: '7px 8px 9px 8px', width: 42, display: 'flex', justifyContent: 'center', alignItems: 'center', - marginLeft: -41, + marginLeft: -36, backgroundColor: '#CCD4DD', + fontFamily: 'Lato', + fontWeight: 'bold', + marginTop: 5, }, textSection: { - width: '48%', + width: 315, border: '1px solid white', - margin: '10px 4px', - padding: 10, + margin: '20px 4px', + padding: '10px 25px 13px 29px', }, modalFooter: { borderTop: '1px solid rgba(#000,0.3)', @@ -87,7 +99,7 @@ const useStyles = makeStyles((theme) => ({ button: { marginLeft: '10px', marginRight: '10px', - borderRadius: '5px', + borderRadius: '10px', boxSizing: 'border-box', height: 38, width: 97, @@ -95,6 +107,8 @@ const useStyles = makeStyles((theme) => ({ fontSize: 11, textAlign: 'center', color: '#fff', + fontFamily: 'lato', + boxShadow: 'none', }, uploadButton: { borderRadius: '5px', @@ -107,37 +121,46 @@ const useStyles = makeStyles((theme) => ({ backgroundColor: '#437BBE', }, modalRoot: { - background: 'rgba(0,0,0,0.2)', + background: 'green', }, textArea: { - height: '150px !important', + height: '151px !important', width: '100%', - overflowY: 'scroll !important', - border: '1.25px solid #437BBE', + border: '1.5px solid #437BBE', borderRadius: 10, + fontSize: 15, + fontFamily: 'Lato', + fontStyle: 'italic', + color: '#437BBE', + padding: '9px 13px', + '&::placeholder': { + fontSize: 15, + fontFamily: 'Lato', + fontStyle: 'italic', + color: '#437BBE', + }, }, listTitle: { fontWeight: 300, - fontSize: 14, + fontFamily: 'Nunito', + color: 'black', + fontSize: 16, }, tooltipIcon: { - fontSize: 12, + fontSize: 18, fontWeight: 600, + marginBottom: 12, + marginLeft: 5, }, horizontal: { height: 1, width: 214, - border: '1px solid #FFFFFF', backgroundColor: '#FFFFFF', - marginTop: 10, + marginTop: 30, }, fileUploader: { - justifyContent: 'center', - marginTop: 5, - display: 'block', - }, - uploaderComponent: { - paddingRight: 70, + display: 'flex', + flexDirection: 'column', }, fileName: { margin: 'unset', @@ -152,12 +175,27 @@ const useStyles = makeStyles((theme) => ({ display: 'flex', flexDirection: 'column', alignItems: 'center', + paddingTop: '16px', }, refresh: { color: '#1F2F50', height: 14, cursor: 'pointer', }, + customTooltip: { + border: '#03A383 1px solid', + }, + customArrow: { + '&::before': { + border: '#03A383 1px solid', + }, + }, + helpIcon: { + zIndex: '600', + }, + helpIconButton: { + marginBottom: 10, + }, })); const FacetModal = ({ @@ -246,6 +284,20 @@ const FacetModal = ({ setUploadedFileName(fileName); }; + const getToolTip = (message) => ( + + + + + + ); + return (
-

Upload Case Set

+

+ Upload Case Set + + close icon + +

@@ -265,9 +325,7 @@ const FacetModal = ({

Add a list of Case IDs:

 - - - + {getToolTip('Add the case indentifier.')}
or
-

Choose a file to upload

+

Choose a file to upload:

 - - - + {getToolTip('Add the case indentifier.')}
Cancel @@ -313,6 +371,7 @@ const FacetModal = ({ onClick={clearData} style={{ backgroundColor: '#437BBE' }} className={classes.button} + id="uploadCaseSetClear" > Clear @@ -322,6 +381,7 @@ const FacetModal = ({ onClick={submitCase} style={{ backgroundColor: '#03A383' }} className={classes.button} + id="uploadCaseSetSubmit" > Submit diff --git a/src/components/SideBar/SideBarComponents/FacetFilters.js b/src/components/SideBar/SideBarComponents/FacetFilters.js index 2ad7d7273..4ab6990ff 100644 --- a/src/components/SideBar/SideBarComponents/FacetFilters.js +++ b/src/components/SideBar/SideBarComponents/FacetFilters.js @@ -1,4 +1,3 @@ -/* eslint-disable */ import React from 'react'; import { useSelector, useDispatch } from 'react-redux'; import { @@ -20,7 +19,7 @@ import { // import createMuiTheme from '@material-ui/styles'; import _ from 'lodash'; import { - ArrowDropDown as ArrowDropDownIcon, Close as CloseIcon + ArrowDropDown as ArrowDropDownIcon, Close as CloseIcon, // Replay as ReplayIcon, } from '@material-ui/icons'; import { @@ -36,6 +35,7 @@ import { } from '../../../pages/dashboardTab/store/dashboardReducer'; import { facetSectionVariables, + facetSearchData, defaultFacetSectionVariables, sortLabels, showCheckboxCount, resetIconFilter, @@ -58,14 +58,14 @@ const CustomExpansionPanelSummary = withStyles({ minHeight: 48, paddingLeft: 14, paddingRight: 14, - paddingTop:6, + paddingTop: 6, '&$expanded': { minHeight: 48, }, }, content: { '&$expanded': { - margin: '16px 0', + margin: '4px 0px 15px 0px', }, }, expanded: {}, @@ -108,6 +108,8 @@ export const FacetPanelComponent = ({ classes }, ref) => { // redux use actions const dispatch = useDispatch(); + const [showSearch, toggleSearch] = React.useState(false); + const [groupsExpanded, setGroupsExpanded] = React.useState([]); const [sectionExpanded, setSectionExpanded] = React.useState( @@ -122,8 +124,6 @@ export const FacetPanelComponent = ({ classes }, ref) => { const searchRef = React.useRef(); - const [showSearch, toggleSearch] = React.useState(false); - const clearFilters = () => { searchRef.current.clear(); }; @@ -140,7 +140,17 @@ export const FacetPanelComponent = ({ classes }, ref) => { subject_ids: [], sample_ids: [], file_ids: [], - })) + })); + + const autoCompleteSelection = useSelector((state) => ( + state.dashboardTab + && state.dashboardTab.autoCompleteSelection + ? state.dashboardTab.autoCompleteSelection : { + subject_ids: [], + sample_ids: [], + file_ids: [], + })); + let groupNameColor = ''; function getGroupNameColor(sideBarItem, currentSection, sideBarIndex) { groupNameColor = 'black'; @@ -173,6 +183,29 @@ export const FacetPanelComponent = ({ classes }, ref) => { setGroupsExpanded(sideBarContent.defaultPanel); } }); + + React.useEffect(() => { + // Open toggle chnages + if (sectionExpanded.includes('Cases')) { + toggleSearch(true); + } else { + toggleSearch(false); + } + }, [sectionExpanded]); + + React.useEffect(() => { + // Open all sections and groups when user selected auto complete + if (bulkUpload.subject_ids.length > 0 || autoCompleteSelection.subject_ids.length > 0) { + const allSectionLabels = Object.keys(facetSectionVariables); + const allCheckBoxLabels = facetSearchData.reduce((acc, facet) => ( + [...acc, facet.label] + ), []); + + setSectionExpanded(allSectionLabels); + setGroupsExpanded(allCheckBoxLabels); + } + }, [bulkUpload, autoCompleteSelection]); + const handleGroupsChange = (panel) => (event, isExpanded) => { const groups = _.cloneDeep(groupsExpanded); if (isExpanded) { @@ -199,7 +232,6 @@ export const FacetPanelComponent = ({ classes }, ref) => { sections.splice(index, 1); } } - setSectionExpanded(sections); }; @@ -358,44 +390,45 @@ export const FacetPanelComponent = ({ classes }, ref) => { // This ref is used to clear case upload modal const modelRef = React.useRef(); - function InputSetListItem(){ - return - <> - - -
- - INPUT SET - -
- { - modelRef.current.clear(); - uploadBulkModalSearch([],'subject'); - }} - > - - - - - - - } - + function InputSetListItem() { + return ( + + <> + + +
+ + INPUT SET + +
+ { + modelRef.current.clear(); + uploadBulkModalSearch([], 'subject'); + }} + > + + + + + + + ); + } React.useImperativeHandle(ref, () => ({ clear() { @@ -422,7 +455,7 @@ export const FacetPanelComponent = ({ classes }, ref) => { open={showCasesModal} closeModal={closeCasesModal} handleClose={closeCasesModal} - type={'subjectIds'} + type="subjectIds" ref={modelRef} /> { showSearch && (
{bulkUpload.subject_ids.length !== 0 ? : ''} - +
) @@ -531,8 +568,9 @@ export const FacetPanelComponent = ({ classes }, ref) => { classes={{ root: classes.expansionPanelDetailsRoot }} > - {sideBarItem.slider !== true - && ( + {(sideBarItem.slider !== true && sideBarItem.checkboxItems + && sideBarItem.checkboxItems.length) + ? (
@@ -573,6 +611,15 @@ export const FacetPanelComponent = ({ classes }, ref) => { {sortLabels.sortByCount}
+ ) : ( +
+ + No data for this field + +
)} {sideBarItem.slider === true && ( @@ -626,75 +673,75 @@ export const FacetPanelComponent = ({ classes }, ref) => { /> ), )) : ( -
-
-
- - Min: -   - - -
-
- - Max: -   - - -
- +
+
+ + Min: +   + + +
+
+ + Max: +   + + +
+ handleChangeSlider( - sideBarIndex, - value, - )} - onChangeCommitted={ + onChange={(event, value) => handleChangeSlider( + sideBarIndex, + value, + )} + onChangeCommitted={ (event, value) => handleChangeCommittedSlider( sideBarItem, value, ) } - valueLabelDisplay="auto" - getAriaValueText={valuetext} - disableSwap - min={sideBarItem.checkboxItems.lowerBound} - max={sideBarItem.checkboxItems.upperBound} - classes={{ - rail: classes.rail, - thumb: classes.thumb, - track: classes.track, - }} - /> - - {sideBarItem.checkboxItems.lowerBound} - - - {sideBarItem.checkboxItems.upperBound} - -
-
- {typeof sliderValue[sideBarIndex] !== 'undefined' - ? (sliderValue[sideBarIndex][0] + valueLabelDisplay="auto" + getAriaValueText={valuetext} + disableSwap + min={sideBarItem.checkboxItems.lowerBound} + max={sideBarItem.checkboxItems.upperBound} + classes={{ + rail: classes.rail, + thumb: classes.thumb, + track: classes.track, + }} + /> + + {sideBarItem.checkboxItems.lowerBound} + + + {sideBarItem.checkboxItems.upperBound} + +
+
+ {typeof sliderValue[sideBarIndex] !== 'undefined' + ? (sliderValue[sideBarIndex][0] > sideBarItem.checkboxItems.lowerBound || sliderValue[sideBarIndex][1] < sideBarItem.checkboxItems.upperBound) @@ -738,9 +785,9 @@ export const FacetPanelComponent = ({ classes }, ref) => {
) : ( - )} + )} +
-
) } diff --git a/src/components/SideBar/SideBarComponents/clearFilters.js b/src/components/SideBar/SideBarComponents/clearFilters.js index 23f88baed..7d5a5d37f 100644 --- a/src/components/SideBar/SideBarComponents/clearFilters.js +++ b/src/components/SideBar/SideBarComponents/clearFilters.js @@ -35,7 +35,7 @@ const styles = (theme) => ({ margin: 'auto', }, customButton: { - borderRadius: '5px', + borderRadius: '9px', maxWidth: '30px', maxHeight: '30px', minWidth: '30px', @@ -57,7 +57,7 @@ const styles = (theme) => ({ resetText: { marginTop: '0px', marginLeft: '8px', - color: '#a9b2b9', + color: '#638fb5', fontSize: 14, }, resetTextDisabled: { diff --git a/src/components/SideBar/SideBarComponents/searchComponet.js b/src/components/SideBar/SideBarComponents/searchComponet.js index 2ef1f43e1..79f983d8c 100644 --- a/src/components/SideBar/SideBarComponents/searchComponet.js +++ b/src/components/SideBar/SideBarComponents/searchComponet.js @@ -106,7 +106,7 @@ const LocalSearchComponent = ({ classes, type }, ref) => { <>
- + {value.slice().reverse().map((v, index) => ( <> {
close icon @@ -142,7 +142,7 @@ const LocalSearchComponent = ({ classes, type }, ref) => { onChange(newValue, reason)} @@ -168,7 +168,7 @@ const LocalSearchComponent = ({ classes, type }, ref) => { size="small" InputProps={{ ...params.InputProps, - style: { paddingLeft: 12, paddingRight: 35 }, + style: { paddingLeft: 12, paddingRight: 35, backgroundColor: '#fff' }, endAdornment: ( <> {loading ? : null} diff --git a/src/components/SideBar/SideBarComponents/styles/FacetFiltersStyles.js b/src/components/SideBar/SideBarComponents/styles/FacetFiltersStyles.js index 1a9372f41..559c77d3d 100644 --- a/src/components/SideBar/SideBarComponents/styles/FacetFiltersStyles.js +++ b/src/components/SideBar/SideBarComponents/styles/FacetFiltersStyles.js @@ -64,10 +64,11 @@ const styles = () => ({ fontSize: 20, fontWeight: 300, marginLeft: 10, + color: 'gray', }, searchContainer: { zIndex: 3, - paddingTop: '14px', + paddingTop: '15px', marginLeft: '8px', }, subSectionSummaryText: { diff --git a/src/components/SideBar/SideBarComponents/styles/searchComponentStyles.js b/src/components/SideBar/SideBarComponents/styles/searchComponentStyles.js index e660df682..08d7e3a39 100644 --- a/src/components/SideBar/SideBarComponents/styles/searchComponentStyles.js +++ b/src/components/SideBar/SideBarComponents/styles/searchComponentStyles.js @@ -1,7 +1,7 @@ const styles = () => ({ listPadding: { - paddingTop: '0px', - paddingBottom: '4px', + paddingTop: 0, + paddingBottom: 4, }, backdrop: { zIndex: 99999, @@ -55,6 +55,10 @@ const styles = () => ({ }, }, }, + deleteIcon: { + cursor: 'pointer', + marginTop: -4, + }, inputRoot: { borderRadius: 10, marginBottom: '7px', @@ -81,7 +85,7 @@ const styles = () => ({ height: 10, }, listItemGutters: { - padding: '2px 15px 2px 18px', + padding: '0px 15px 0px 18px', display: 'flex', justifyContent: 'space-between', }, diff --git a/src/components/serverPaginatedTable/serverPaginatedTable.js b/src/components/serverPaginatedTable/serverPaginatedTable.js index b21271f62..cbee376d4 100644 --- a/src/components/serverPaginatedTable/serverPaginatedTable.js +++ b/src/components/serverPaginatedTable/serverPaginatedTable.js @@ -118,69 +118,63 @@ class ServerPaginatedTableView extends React.Component { }); } - // mock async function - xhrRequest = (url, page, sortOrder = {}) => new Promise((resolve) => { - // mock page data - let fullData = this.getSrcData() !== {} ? this.getSrcData() : [{}]; - // console.log(fullData); - // mock record count from server - normally this would be a number attached to the return data - const total = 60; - const sortField = sortOrder.name; - const sortDir = sortOrder.direction; + // mock async function + xhrRequest = (url, page, sortOrder = {}) => new Promise((resolve) => { + // mock page data + let fullData = this.getSrcData() !== {} ? this.getSrcData() : [{}]; + // mock record count from server - normally this would be a number attached to the return data + const total = 60; + const sortField = sortOrder.name; + const sortDir = sortOrder.direction; - if (sortField) { - fullData = fullData.sort((a, b) => { - if (a[sortField] < b[sortField]) { - return 1 * (sortDir === 'asc' ? -1 : 1); - } if (a[sortField] > b[sortField]) { - return -1 * (sortDir === 'asc' ? -1 : 1); - } - return 0; + if (sortField) { + fullData = fullData.sort((a, b) => { + if (a[sortField] < b[sortField]) { + return 1 * (sortDir === 'asc' ? -1 : 1); + } if (a[sortField] > b[sortField]) { + return -1 * (sortDir === 'asc' ? -1 : 1); + } + return 0; + }); + } + + const localPage = page; + const srcData = fullData; + if (srcData !== 'undefined' && srcData.length !== this.state.rowsPerPage && this.props.count > this.state.rowsPerPage && this.props.localRowsPerPage === null) { + this.changePage(0, {}); + } else { + if (this.props.count < 10) { + this.setState({ + rowsPerPage: 10, }); } + const data = srcData; + if (this.props.updateSortOrder) { + localStorage.setItem('dataLength', String(srcData.length)); + localStorage.setItem('data', JSON.stringify(srcData)); + } + setTimeout(() => { + resolve({ + data, total, localPage, + }); + }, 500); + } + }) - // eslint-disable-next-line max-len - const localPage = page; - /* const srcData = fullData.slice( - page * this.state.rowsPerPage, - (page + 1) * this.state.rowsPerPage, - ); */ - const srcData = fullData; - if (srcData !== 'undefined' && srcData.length !== this.state.rowsPerPage && this.props.count > this.state.rowsPerPage && this.props.localRowsPerPage === null) { - this.changePage(0, {}); + // set this.props.columns display true/false depending on updatedColumns from + // onViewColumnsChange + setUpdatedColumnsDisplay = (stateUpdatedColumns) => { + stateUpdatedColumns.map((updatedColumns) => { + const index = this.props.columns.map((e) => e.name) + .indexOf(updatedColumns.label); + if (updatedColumns.status === 'remove') { + this.props.columns[index].options.display = false; } else { - if (this.props.count < 10) { - this.setState({ - rowsPerPage: 10, - }); - } - const data = srcData; - if (this.props.updateSortOrder) { - localStorage.setItem('dataLength', String(srcData.length)); - localStorage.setItem('data', JSON.stringify(srcData)); - } - setTimeout(() => { - resolve({ - data, total, localPage, - }); - }, 500); + this.props.columns[index].options.display = true; } - }) - - // set this.props.columns display true/false depending on updatedColumns from - // onViewColumnsChange - setUpdatedColumnsDisplay = (stateUpdatedColumns) => { - stateUpdatedColumns.map((updatedColumns) => { - const index = this.props.columns.map((e) => e.name) - .indexOf(updatedColumns.label); - if (updatedColumns.status === 'remove') { - this.props.columns[index].options.display = false; - } else { - this.props.columns[index].options.display = true; - } - return ''; - }); - } + return ''; + }); + } changePage = (page, sortOrder) => { this.setState({ @@ -226,6 +220,19 @@ class ServerPaginatedTableView extends React.Component { this.setState({ columns }); }; + getSortData = (arr, sortColumn, sortDirection) => arr.sort((a, b) => { + const keyA = parseInt(a[sortColumn].replace(/^\D+/g, ''), 10); + const keyB = parseInt(b[sortColumn].replace(/^\D+/g, ''), 10); + if (sortDirection === 'asc') { + if (keyA < keyB) return -1; + if (keyA > keyB) return 1; + } else { + if (keyA < keyB) return 1; + if (keyA > keyB) return -1; + } + return 0; + }) + async fetchData(offset, rowsRequired, sortOrder = {}) { // Preparing sort order for query variable const sortColumn = Object.keys(sortOrder).length === 0 ? this.props.defaultSortCoulmn || '' : sortOrder.name; @@ -254,18 +261,25 @@ class ServerPaginatedTableView extends React.Component { page, }); } - const fetchResult = await client - .query({ - query: this.props.overview, - variables: { - offset: offsetReal, - first: this.props.count < rowsRequired ? this.props.count : rowsRequired, - order_by: sortColumn, - sort_direction: sortDirection, - ...this.props.queryCustomVaribles, - }, - }) - .then((result) => (result.data[this.props.paginationAPIField])); + let fetchResult = []; + if (this.props.data && this.props.data.length > this.state.rowsPerPage) { + const newData = [...this.props.data]; + const sortedData = this.getSortData(newData, sortColumn, sortDirection); + fetchResult = sortedData.splice(offsetReal, this.state.rowsPerPage); + } else { + fetchResult = await client + .query({ + query: this.props.overview, + variables: { + offset: offsetReal, + first: this.props.count < rowsRequired ? this.props.count : rowsRequired, + order_by: sortColumn, + sort_direction: sortDirection, + ...this.props.queryCustomVaribles, + }, + }) + .then((result) => (result.data[this.props.paginationAPIField])); + } if (this.props.updateSortOrder) { localStorage.setItem('dataLength', String(fetchResult.length)); localStorage.setItem('data', JSON.stringify(fetchResult)); @@ -284,6 +298,11 @@ class ServerPaginatedTableView extends React.Component { count, rowsPerPage, rowsPerPageOptions: [], + textLabels: { + body: { + noMatch: 'No Matching Records Found', + }, + }, customToolbar: this.props.tableDownloadCSV.defaultFullTableDownload ? () => ( this.props.tableDownloadCSV && ( rowsPerPage) { + const newData = [...data]; + const sortedData = this.getSortData(newData, sortOrder.name, sortOrder.direction); + updatedData = sortedData.splice(0, rowsPerPage); + } return (
- {data === 'undefined' ? : ( + {updatedData === 'undefined' ? : ( ({ + modal: { + display: 'flex', + padding: theme.spacing(1), + alignItems: 'center', + justifyContent: 'center', + }, + paper: { + height: '328px', + minWidth: '32%', + borderRadius: '10px', + border: '0.5px solid #000', + backgroundColor: theme.palette.background.paper, + }, + closeIcon: { + cursor: 'pointer', + }, + modalTitle: { + fontFamily: 'lato', + borderBottom: '1px solid #BDBFC2', + fontSize: 20, + color: '#4D6787', + padding: '16px 32px 12px 32px', + margin: '0px', + borderTopLeftRadius: 10, + borderTopRightRadius: 10, + display: 'flex', + justifyContent: 'space-between', + alignItems: 'center', + fontWeight: 'bold', + }, + modalContainer: { + justifyContent: 'space-between', + paddingRight: 33, + paddingLeft: 33, + paddingTop: 33, + fontFamily: 'lato', + textAlign: 'center', + }, + modalBodyTitle: { + fontSize: '25px', + fontWeight: 'bold', + paddingBottom: 25, + }, + modalMessage: { + fontSize: '17px', + paddingBottom: 14, + }, + modalFooter: { + borderTop: '1px solid rgba(#000,0.3)', + display: 'flex', + justifyContent: 'center', + alignItems: 'center', + marginTop: 20, + marginBottom: 20, + }, + button: { + marginLeft: '10px', + marginRight: '10px', + borderRadius: '10px', + boxSizing: 'border-box', + height: 38, + width: 97, + border: '1px solid #626262', + fontSize: 11, + textAlign: 'center', + color: '#fff', + fontFamily: 'lato', + boxShadow: 'none', + }, + modalRoot: { + background: 'green', + }, +})); + +const SessionTimeOutModal = ({ + closeModal, submit, title, message, ...modalProps +}, ref) => { + const classes = useStyles(); + + React.useImperativeHandle(ref, () => ({ + clear() { + }, + })); + + const cancelModal = () => { + closeModal(); + }; + + return ( + +
+

+ {title} + + close icon + +

+
+
Your session has expired.
+
+
Please login again to continue working.
+
+
+ + +
+
+ + ); +}; + +const sessionTimeOutModal = React.forwardRef(SessionTimeOutModal); + +export default sessionTimeOutModal; diff --git a/src/pages/armDetail/armDetailView.js b/src/pages/armDetail/armDetailView.js index 523df2aee..73db03aa2 100644 --- a/src/pages/armDetail/armDetailView.js +++ b/src/pages/armDetail/armDetailView.js @@ -11,7 +11,7 @@ import StatsView from '../../components/Stats/StatsView'; import { Typography } from '../../components/Wrappers/Wrappers'; import icon from '../../assets/icons/Arms.Icon.svg'; import fileCountIcon from '../../assets/icons/Program_Detail.FileCount.svg'; -import globalData from '../../bento/globalData'; +import globalData from '../../bento/siteWideConfig'; import { header, subsections, @@ -106,7 +106,7 @@ const ArmDetail = ({ data, classes }) => { Number of cases: ({ ...location, pathname: '/cases' })} + to={(location) => ({ ...location, pathname: '/explore' })} onClick={() => redirectTo()} > diff --git a/src/pages/caseDetail/caseDetailView.js b/src/pages/caseDetail/caseDetailView.js index 33528cf2c..574b2adfd 100644 --- a/src/pages/caseDetail/caseDetailView.js +++ b/src/pages/caseDetail/caseDetailView.js @@ -6,7 +6,7 @@ import { import _ from 'lodash'; import { useDispatch } from 'react-redux'; import { getOptions, getColumns } from 'bento-components'; -import globalData from '../../bento/globalData'; +import globalData from '../../bento/siteWideConfig'; import StatsView from '../../components/Stats/StatsView'; import { Typography } from '../../components/Wrappers/Wrappers'; import GridWithFooter from '../../components/GridWithFooter/GridView'; @@ -56,7 +56,7 @@ const CaseDetail = ({ data, filesOfSamples, classes }) => { const breadCrumbJson = [{ name: 'ALL CASES /', - to: '/cases', + to: '/explore', isALink: true, }]; diff --git a/src/pages/dashboardTab/components/tabView.js b/src/pages/dashboardTab/components/tabView.js index 6c78f31df..d0934a45d 100644 --- a/src/pages/dashboardTab/components/tabView.js +++ b/src/pages/dashboardTab/components/tabView.js @@ -19,7 +19,7 @@ import CustomDataTable from '../../../components/serverPaginatedTable/serverPagi import { addToCart, getCart, cartWillFull } from '../../fileCentricCart/store/cart'; import AddToCartAlertDialog from '../../../components/AddToCartDialog'; import DocumentDownload from '../../../components/DocumentDownload/DocumentDownloadView'; -import globalData from '../../../bento/globalData'; +import globalData from '../../../bento/siteWideConfig'; const getOverviewQuery = (api) => (api === 'GET_SAMPLES_OVERVIEW_QUERY' ? GET_SAMPLES_OVERVIEW_QUERY : api === 'GET_FILES_OVERVIEW_QUERY' ? GET_FILES_OVERVIEW_QUERY : GET_CASES_OVERVIEW_QUERY); @@ -262,6 +262,7 @@ const TabView = ({ {}, DocumentDownload, globalData.replaceEmptyValueWith)} options={finalOptions} diff --git a/src/pages/dashboardTab/store/dashboardReducer.js b/src/pages/dashboardTab/store/dashboardReducer.js index fe85e875b..12da6fd01 100644 --- a/src/pages/dashboardTab/store/dashboardReducer.js +++ b/src/pages/dashboardTab/store/dashboardReducer.js @@ -978,6 +978,13 @@ export function sortAll() { }); } +function getCheckbox(data, mapping) { + const checkboxData = data[mapping].map((item) => { + return { name: item.group, isChecked: false, subjects: item.subjects }; + }); + return checkboxData; +} + /** * updateFilteredAPIDataIntoCheckBoxData works for first time init Checkbox, that function transforms the data which returns from API into a another format @@ -988,19 +995,19 @@ so it contains more information and easy for front-end to show it correctly. * @return {json} */ -function customCheckBox(data, facetSearchData1) { +function customCheckBox(data, facetSearchData1, isEmpty) { const caseCountField = 'subjects'; return ( facetSearchData1.map((mapping) => ({ groupName: mapping.label, checkboxItems: mapping.slider === true ? data[mapping.api] - : transformAPIDataIntoCheckBoxData( + : (isEmpty ? getCheckbox(data, mapping.apiForFiltering) : transformAPIDataIntoCheckBoxData( data[mapping.api], mapping.field, caseCountField, mapping.customNumberSort, - ), + )), datafield: mapping.datafield, show: mapping.show, slider: mapping.slider, @@ -1160,7 +1167,7 @@ const reducers = { let checkboxData1 = setSelectedFilterValues(updatedCheckboxData1, item.allFilters); updatedCheckboxData1 = updatedCheckboxData1.concat(rangeData); checkboxData1 = checkboxData1.concat(rangeData); - fetchDataForDashboardTab(state.currentActiveTab, item.allFilters); + fetchDataForDashboardTab(tabIndex[0].title, item.allFilters); return { ...state, setSideBarLoading: false, @@ -1174,7 +1181,10 @@ const reducers = { }; }, LOCAL_SEARCH: (state, item) => { - const checkboxData = customCheckBox(item.result.data, facetSearchData); + const isEmpty = item.subjectResponse.data + && item.subjectResponse.data.subjectOverview + && item.subjectResponse.data.subjectOverview.length < 1; + const checkboxData = customCheckBox(item.result.data, facetSearchData, isEmpty); const newCheckboxData = [...checkboxData]; checkboxData.map((val, idx) => { if (item.variables && item.variables[val.datafield] && item.variables[val.datafield].length) { diff --git a/src/pages/fileCentricCart/cartController.js b/src/pages/fileCentricCart/cartController.js index c0caad155..a72d4adcf 100644 --- a/src/pages/fileCentricCart/cartController.js +++ b/src/pages/fileCentricCart/cartController.js @@ -3,14 +3,14 @@ import React from 'react'; import { useQuery } from '@apollo/client'; import { getCart, updateSortOrder } from './store/cart'; import { Typography } from '../../components/Wrappers/Wrappers'; -import { GET_MY_CART_DATA_QUERY, GET_MY_CART_DATA_QUERY_DESC, table } from '../../bento/fileCentricCartWorkflowData'; +import { GET_MY_CART_DATA_QUERY, table } from '../../bento/fileCentricCartWorkflowData'; import CartView from './cartView'; const cartController = () => { const cart = getCart(); const ids = cart.fileIds ? cart.fileIds : []; const defaultSortDirection = cart.sortDirection === '' || !cart.sortDirection ? table.defaultSortDirection || 'asc' : cart.sortDirection; - const CART_QUERY = defaultSortDirection === 'desc' ? GET_MY_CART_DATA_QUERY_DESC : GET_MY_CART_DATA_QUERY; + const CART_QUERY = GET_MY_CART_DATA_QUERY; const defaultSortColumnValue = cart.sortColumn === '' || !cart.sortColumn ? table.defaultSortField || '' : cart.sortColumn; // if the user open the webpage for the first time. if (!localStorage.getItem('sortColumn') || !localStorage.getItem('page') || !localStorage.getItem('rowsPerPage')) { @@ -61,9 +61,7 @@ const cartController = () => { localPage={localPage} localRowsPerPage={localRowsPerPage} data={ - defaultSortDirection === 'desc' - ? data.filesInListDesc === null || data.filesInListDesc === '' ? [] : data.filesInListDesc - : data.filesInList === null || data.filesInList === '' ? [] : data.filesInList + data.filesInList === null || data.filesInList === '' ? [] : data.filesInList } /> ); diff --git a/src/pages/fileCentricCart/cartView.js b/src/pages/fileCentricCart/cartView.js index 4aadfbcd3..db1a8f3e2 100644 --- a/src/pages/fileCentricCart/cartView.js +++ b/src/pages/fileCentricCart/cartView.js @@ -89,7 +89,9 @@ const cartView = ({ .query({ query: GET_MY_CART_DATA_QUERY, variables: { - first: fileIDs.length, ...{ file_ids: fileIDs }, + sort_direction: defaultSortDirection, + first: fileIDs.length, + ...{ file_ids: fileIDs }, }, }) .then((result) => result.data.filesInList); diff --git a/src/pages/programDetail/programDetailView.js b/src/pages/programDetail/programDetailView.js index 3eebf23ee..45122b945 100644 --- a/src/pages/programDetail/programDetailView.js +++ b/src/pages/programDetail/programDetailView.js @@ -12,7 +12,7 @@ import { getColumns, CustomActiveDonut, } from 'bento-components'; -import globalData from '../../bento/globalData'; +import globalData from '../../bento/siteWideConfig'; import { pageTitle, table, externalLinkIcon, programDetailIcon, breadCrumb, aggregateCount, @@ -313,7 +313,7 @@ const ProgramView = ({ classes, data, theme }) => { diff --git a/src/pages/programs/programsView.js b/src/pages/programs/programsView.js index bd440ae95..ff4fe8367 100644 --- a/src/pages/programs/programsView.js +++ b/src/pages/programs/programsView.js @@ -4,7 +4,7 @@ import { withStyles, } from '@material-ui/core'; import { CustomDataTable, getOptions, getColumns } from 'bento-components'; -import globalData from '../../bento/globalData'; +import globalData from '../../bento/siteWideConfig'; import { table, programListingIcon, externalLinkIcon, } from '../../bento/programData'; @@ -57,7 +57,7 @@ const Programs = ({ classes, data }) => {