Binary installers for the latest released version are available at the python package index and on conda.
The source code is currently hosted on GitHub at: https://github.com/Boyle-Lab/F-Seq2
- python >= 3.9
- bedtools >= 2.29.0 (required by pybedtools)
$ conda create --name fseq2_env python=3.6
$ conda activate fseq2_env
# PyPI
$ pip install fseq2
# or conda
$ conda install -c bioconda -c dmentipl -c samzhao fseq2
$ wget https://github.com/Boyle-Lab/F-Seq2/archive/refs/tags/v2.0.4.zip
$ unzip master.zip
$ cd F-Seq2-master
# install all dependencies listed below
$ pip install numpy==1.26.4
$ pip install .
$ cd Fseq2
$ pytest
This may take 1 min
- numpy == 1.26.4
- scipy >= 1.1.0
- pandas >= 0.24
- statsmodels
- KDEpy
- pybedtools
- pyBigWig
- h5py
- matplotlib
- cython