.pre-commit-config.yaml

repos:
  # Basic pre-commit hooks for whitespace and yaml checks
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.0.1
    hooks:
      - id: trailing-whitespace
        description: "Removes trailing whitespace from all lines."
      - id: end-of-file-fixer
        description: "Ensures all files end with a newline."
      - id: check-yaml
        description: "Validates that YAML files have correct syntax."
      - id: check-added-large-files
        description: "Prevents the addition of large files exceeding a defined size limit."
      - id: check-merge-conflict
        description: "Detects leftover merge conflict markers."

  # Python specific hooks
  - repo: https://github.com/psf/black
    rev: 24.4.2
    hooks:
      - id: black
        description: "Automatically formats Python code to comply with PEP 8."
  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: v1.10.1
    hooks:
      - id: mypy
        description: "Static type checker for Python code."
        args: [--show-error-codes, --install-types, --non-interactive]
        additional_dependencies: ['types-flask']
        'types_or':
          - python
          - pyi
  - repo: https://github.com/PyCQA/bandit
    rev: 1.7.9
    hooks:
      - id: bandit
        description: "Security analysis tool for Python code to find common security issues."
  - repo: https://github.com/timothycrosley/isort
    rev: 5.12.0
    hooks:
      - id: isort
        description: "Sorts imports in Python files."
  - repo: https://github.com/PyCQA/autoflake
    rev: v2.3.1
    hooks:
      - id: autoflake
        name: Remove unused imports and variables
        description: This hook uses autoflake to remove all unused imports and variables from the code.
        args: [--remove-all-unused-imports, --remove-unused-variables, --in-place]

  # Frontend specific hooks
  - repo: https://github.com/pre-commit/mirrors-prettier
    rev: v2.3.2
    hooks:
      - id: prettier
        description: "Code formatter for JavaScript, TypeScript, JSON, CSS, SCSS, HTML, and Vue files."
        files: \.(js|ts|json|css|scss|html|vue)$

  - repo: local
    hooks:
      - id: eslint
        name: ESLint
        entry: bash -c "cd frontend && npm run lint"
        language: system
        files: \.(js|ts|vue)$
        description: "Runs ESLint to check JavaScript and Vue.js code for issues."

  # Custom hooks for running unit tests
  # - repo: local
    # hooks:
      # - id: run-tests
        # name: Run Tests
        # entry: pytest
        # language: system
        # types: [python]
        # description: "Runs unit tests using pytest to ensure code changes do not break existing functionality."
        # skip: true  # Skip this hook

  # Custom hooks for checking environment dependencies
  # - repo: local
    # hooks:
      # - id: check-environment-yml
        # name: Check Environment YAML
        # entry: ./check-environment-yml
        # language: system
        # files: ^environment\.yml$
        # description: "Checks for changes in environment.yml to ensure all dependencies are up to date."
        # skip: true  # Skip this hook

  # npm audit hook for checking vulnerabilities in frontend dependencies
  # - repo: local
    # hooks:
      # - id: npm-audit
        # name: npm audit
        # entry: bash -c "cd frontend && npm audit --audit-level high"
        # language: system
        # description: "Runs npm audit to check for vulnerabilities in npm dependencies."


  # Shell script linting and formatting
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.0.1
    hooks:
      - id: detect-private-key
        description: "Detects private keys to prevent accidental commits."
      - id: check-case-conflict
        description: "Detects filename case conflicts that can cause issues on case-insensitive filesystems."
      - id: check-json
        description: "Validates that JSON files have correct syntax."

# Additional configurations and overrides
default_language_version:
  python: python3.11
  node: 16.13.1


# Exclude certain directories from checks
exclude: |
  (^|/)(\.git|\.venv|node_modules|dist|build|static|public)/