main.ipynb

{
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   "source": [
    "# <p style=\"text-align: center;\">Construction of an RNA-based Knowledge Graph</p>\n",
    "\n",
    "***\n",
    "***\n",
    "\n",
    "**Authors:** [ECavalleri](https://mail.google.com/mail/u/0/?view=cm&fs=1&tf=1&to=emanuele.cavalleri@unimi.it), [TJCallahan](https://mail.google.com/mail/u/0/?view=cm&fs=1&tf=1&to=callahantiff@gmail.com)\n",
    "\n",
    "**GitHub Repositories:** [RNA-KG](https://github.com/AnacletoLAB/RNA-KG), [PheKnowLator](https://github.com/callahantiff/PheKnowLator/)  \n",
    "<!--- **Release:** **[v2.0.0](https://github.com/callahantiff/PheKnowLator/wiki/v2.0.0)** --->\n",
    "  \n",
    "<br>  \n",
    "\n",
    "**Objective:** Knowledge Graphs (KGs) provide meaningful ways to integrate heterogeneous biological data and represent complex biological mechanisms. \n",
    "[PheKnowLator](https://github.com/callahantiff/PheKnowLator) is a system that support the user in the acquisition of biomedical entities from different kinds of data sources and their representation in terms of a biomedical knowledge graph that models unbiased molecular mechanisms as prescribed by domain ontologies. In this notebook we wish to show the use of PheKnowLator for the generation of an RNA-based KG.\n",
    "\n",
    "***\n",
    "***"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "id": "FMuStNBXRYQ2"
   },
   "source": [
    "## Notebook Purpose\n",
    "**Wiki Page:** **[`Current PheKnowLator release`](https://github.com/callahantiff/PheKnowLator/wiki/)**\n",
    "\n",
    "<br>\n",
    "\n",
    "**Purpose:** This notebook serves as a `main` file for the RNA-KG construction based on PheKnowLator project. This scripts walks through this program step-by-step and generates the knowledge graph shown above. Please see the [PheKnowLator README](https://github.com/callahantiff/PheKnowLator/blob/master/README.md) for more information.\n",
    "\n",
    "<br>\n",
    "\n",
    "**Assumptions:**\n",
    "1. Make sure that the following input documents have been constructed (see the [PheKnowLator Dependencies Wiki](https://github.com/callahantiff/PheKnowLator/wiki/Dependencies) for more information):  \n",
    "  - [`resource_info.txt`](https://github.com/AnacletoLAB/RNA-KG/blob/master/resources/resource_info.txt)\n",
    "  - [`ontology_source_list.txt`](https://github.com/AnacletoLAB/RNA-KG/blob/master/resources/ontology_source_list.txt)\n",
    "  - [`edge_source_list.txt`](https://github.com/AnacletoLAB/RNA-KG/blob/main/resources/edge_source_list.txt)   \n",
    "\n",
    "2. Download [`RELATIONS_LABELS.txt`](https://github.com/AnacletoLAB/RNA-KG/blob/main/resources/relations_data/RELATIONS_LABELS.txt) relations label file prior to running the scripts. Please see [PheKnowLator Dependencies Wiki](https://github.com/callahantiff/PheKnowLator/wiki/Dependencies#relations-data) for more information on how it is generated.\n",
    "\n",
    "3. Select a knowledge graph construction method (i.e. `instance-based` or `subclass-based`).  \n",
    "\n",
    "<br>\n",
    "\n",
    "***\n",
    "### Table of Contents\n",
    "***\n",
    "The three primary steps involved in building a knowledge graph are `Downloading Data Sources`, `Creating Edge Lists`, and `Building the knowledge graphs`.\n",
    "\n",
    "* [Data Sources](#data-source)  \n",
    "* [Create Edge Lists](#create-edges)  \n",
    "* [Build Knowledge Graph](#build-kg)  \n",
    "\n",
    "***\n",
    "\n",
    "***"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
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   },
   "source": [
    "_____\n",
    "### Set-Up Environment"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "id": "AgpFq-tWRYQ9"
   },
   "outputs": [],
   "source": [
    "# import needed libraries\n",
    "import glob\n",
    "import json\n",
    "import pandas\n",
    "import ray\n",
    "import time\n",
    "\n",
    "# import module\n",
    "from pkt_kg.downloads import OntData, LinkedData\n",
    "from pkt_kg.edge_list import CreatesEdgeList\n",
    "from pkt_kg.knowledge_graph import FullBuild, PartialBuild, PostClosureBuild"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "id": "GCpSJ9hORYRE"
   },
   "source": [
    "***\n",
    "## Download Data Sources <a class=\"anchor\" id=\"data-source\"></a>\n",
    "\n",
    "**Wiki Page:** **[`Dependencies`](https://github.com/callahantiff/PheKnowLator/wiki/Dependencies)**  \n",
    "\n",
    "**Purpose:**\n",
    "This portion of this portion of the algorithm is to download:\n",
    "1. [Download Ontology Data](#download-ontology-data)  \n",
    "2. [Download Edge Data](#download-edge-data)   \n",
    "\n",
    "<br>\n",
    "\n",
    "**Input Files:**\n",
    "  - [`resource_info.txt`](https://github.com/emanuelecavalleri/testRNA-KG/blob/master/resources/resource_info.txt)\n",
    "  - [`ontology_source_list.txt`](https://github.com/emanuelecavalleri/testRNA-KG/blob/master/resources/ontology_source_list.txt)\n",
    "  - [`edge_source_list.txt`](https://github.com/emanuelecavalleri/testRNA-KG/blob/master/resources/edge_source_list.txt)\n",
    "\n",
    "<br>\n",
    "\n",
    "**Assumption:** All sources used to construct our knowledge graph need to be preprocessed and ready to download prior to running this code. All mapping, filtering, and label data have been generated prior to this step. For assistance with creating these datasets, see the [`RNA-KG_Preparation.ipynb`](https://github.com/emanuelecavalleri/testRNA-KG/blob/main/notebooks/RNA-KG_Preparation.ipynb), [`inteRNA-KG_Preparation.ipynb`](https://github.com/AnacletoLAB/RNA-KG/blob/main/notebooks/inteRNA-KG_Preparation.ipynb), and [`non-ontological_RNAentities.ipynb`](https://github.com/AnacletoLAB/RNA-KG/blob/main/notebooks/non-ontological_RNAentities.ipynb) Jupyter Notebooks."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "id": "za2MdSLvRYRH"
   },
   "source": [
    "***\n",
    "***\n",
    "### Ontology Data  <a class=\"anchor\" id=\"download-ontology-data\"></a>\n",
    "Ontologies are the core data structure used when building PheKnowLator."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "id": "iDJqLAHcRYRI"
   },
   "outputs": [],
   "source": [
    "ont = OntData('resources/ontology_source_list.txt', 'resources/resource_info.txt')\n",
    "\n",
    "ont.parses_resource_file()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "id": "XaOYUPexRYRL",
    "outputId": "f19371a6-0743-4467-d92f-e7ea54612d68"
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\n",
      "*** Generating Metadata ***\n",
      "\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "100%|██████████| 11/11 [00:00<00:00, 22473.13it/s]\n",
      "100%|██████████| 11/11 [00:00<00:00, 29035.46it/s]\n"
     ]
    }
   ],
   "source": [
    "ont.data_files = ont.source_list\n",
    "ont.generates_source_metadata()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "id": "lep_QSuoRYRP",
    "outputId": "f3b414f1-d57a-48f5-c17e-fcfa5a76b9f1"
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "100%|██████████| 11/11 [00:00<00:00, 4117.94it/s]\n"
     ]
    }
   ],
   "source": [
    "ont._writes_source_metadata_locally()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "id": "CropxvdORYRS",
    "outputId": "608e85e4-d9dd-4e39-d6ea-507d3a48b627"
   },
   "outputs": [
    {
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       " 'variant-premiRNA2566|;;|entity-entity|RO_0002566|https://www.ncbi.nlm.nih.gov/snp/|https://www.mirbase.org/hairpin/|t|0;1|None|None|None',\n",
       " 'variant-gene2566|;;|entity-entity|RO_0002566|https://www.ncbi.nlm.nih.gov/snp/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'variant-disease2566|;;|entity-class|RO_0002566|https://www.ncbi.nlm.nih.gov/snp/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'variant-TF2566_1|;;|entity-class|RO_0002566|https://www.ncbi.nlm.nih.gov/snp/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'variant-TF2566_2|;;|entity-class|RO_0002566|https://www.ncbi.nlm.nih.gov/snp/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
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       " 'miRNA-mRNA11002_3|;;|entity-entity|RO_0011002|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
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       " 'lncRNA-mRNA2434_2|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-mRNA2434_3|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-mRNA2434_4|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'premiRNA-miRNA2203|;;|entity-entity|RO_0002203|https://www.mirbase.org/hairpin/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'premiRNA-premiRNAHOM0|;;|entity-entity|RO_HOM0000000|https://www.mirbase.org/hairpin/|https://www.mirbase.org/hairpin/|t|0;1|None|None|None',\n",
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       " 'miRNA-gene11002|;;|entity-entity|RO_0011002|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-gene2449|;;|entity-entity|RO_0002449|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-gene11016|;;|entity-entity|RO_0011016|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-gene2450|;;|entity-entity|RO_0002450|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-gene11013|;;|entity-entity|RO_0011013|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'premiRNA-mRNA11002|;;|entity-entity|RO_0011002|https://www.mirbase.org/hairpin/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-pseudogene11002|;;|entity-entity|RO_0011002|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-epiModclass2434|;;|entity-class|RO_0002434|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-epiModclass2434|;;|entity-class|RO_0002434|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-epiMod2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|https://www.encodeproject.org/targets/|t|0;1|None|None|None',\n",
       " 'premiRNA-epiMod2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/hairpin/|https://www.encodeproject.org/targets/|t|0;1|None|None|None',\n",
       " 'premiRNA-disease3302|;;|entity-class|RO_0003302|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-disease3302|;;|entity-class|RO_0003302|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-lncRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'premiRNA-lncRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/hairpin/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-tsRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|https://rna.sysu.edu.cn/tsRFun/searchDetail-tsRNA.php?tsRNAid=|t|0;1|None|None|None',\n",
       " 'tsRNA-disease3302|;;|entity-class|RO_0003302|https://rna.sysu.edu.cn/tsRFun/searchDetail-tsRNA.php?tsRNAid=|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'tRF-tRNA_tRFdb2202|;;|entity-entity|RO_0002202|http://genome.bioch.virginia.edu/|http://gtrnadb.ucsc.edu/genomes/eukaryota/Hsapi19/genes/|t|0;1|None|None|None',\n",
       " 'tRF-tRNA_MINTbase2202|;;|entity-entity|RO_0002202|https://cm.jefferson.edu/MINTbase/InputController?v=f&g=GRCh37&e=1&search=submit&t=All&am=All&an=All&da=&tn=&fs=&fn=|http://gtrnadb.ucsc.edu/genomes/eukaryota/Hsapi19/genes/|t|0;1|None|None|None',\n",
       " 'tRF-cellLine1025|;;|entity-class|RO_0001025|http://genome.bioch.virginia.edu/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'tRNA-modification2434|;;|entity-entity|RO_0002434|http://gtrnadb.ucsc.edu/genomes/eukaryota/Hsapi19/genes/|https://genesilico.pl/modomics?|t|0;1|None|None|None',\n",
       " 'tRNA-aminoacid2436|;;|entity-class|RO_0002436|http://gtrnadb.ucsc.edu/genomes/eukaryota/Hsapi19/genes/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-gene2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'snoRNA-miRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'snoRNA-premiRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/hairpin/|t|0;1|None|None|None',\n",
       " 'snoRNA-snoRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'snoRNA-snRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'snoRNA-rRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://scottgroup.med.usherbrooke.ca/snoDB/|t|0;1|None|None|None',\n",
       " 'snoRNA-mRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'snoRNA-tRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://scottgroup.med.usherbrooke.ca/snoDB/|t|0;1|None|None|None',\n",
       " 'snoRNA-retainedIntron2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
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       " 'snoRNA-pseudogene2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'snoRNA-scaRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'snoRNA-lncRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-gene2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-disease3302|;;|entity-class|RO_0003302|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'circRNA-disease3302|;;|entity-class|RO_0003302|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-chemical2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'smallProtein-lncRNA2204|;;|entity-entity|RO_0002434|http://bigdata.ibp.ac.cn/SmProt/SmProt.php?ID=|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-biologicalContext2245|;;|entity-class|RO_0002245|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-biologicalContext2246|;;|entity-class|RO_0002246|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-biologicalContext2291|;;|entity-class|RO_0002291|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-role2260|;;|entity-entity|RO_0002260|http://www.ncbi.nlm.nih.gov/gene/|https://www.genome.gov/genetics-glossary/|t|0;1|None|None|None',\n",
       " 'lncRNA-gocc1018|;;|entity-class|RO_0001018|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-pw56|;;|entity-class|RO_0000056|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-gobp56|;;|entity-class|RO_0000056|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-TF2528|;;|entity-class|RO_0002528|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-TF2529|;;|entity-class|RO_0002529|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-TF2428|;;|entity-class|RO_0002428|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-gomf85|;;|entity-class|RO_0000085|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-gomf85|;;|entity-class|RO_0000085|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-gobp56|;;|entity-class|RO_0000056|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-reactome56|;;|entity-entity|RO_0000056|https://www.mirbase.org/mature/|https://reactome.org/content/detail/|t|0;1|None|None|None',\n",
       " 'miRNA-wikipathwayspw56|;;|entity-entity|RO_0000056|https://www.mirbase.org/mature/|https://www.wikipathways.org/instance/|t|0;1|None|None|None',\n",
       " 'premiRNA-premiRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/hairpin/|https://www.mirbase.org/hairpin/|t|0;1|None|None|None',\n",
       " 'premiRNA-anatomy1025|;;|entity-class|RO_0002434|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'chemical-miRNA2434|;;|class-entity|RO_0002434|http://purl.obolibrary.org/obo/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'chemical-premiRNA2434|;;|class-entity|RO_0002434|http://purl.obolibrary.org/obo/|https://www.mirbase.org/hairpin/|t|0;1|None|None|None',\n",
       " 'gRNA-gene11007|;;|entity-entity|RO_0011007|https://|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'ASO-mRNA3002|;;|entity-entity|RO_0003002|https://eskip-finder.org?|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'ASOd-mRNA2430|;;|entity-entity|RO_0002430|https://go.drugbank.com/drugs/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'ASOd-disease2606|;;|entity-class|RO_0002606|https://go.drugbank.com/drugs/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ASOd-protein11007|;;|entity-class|RO_0011007|https://go.drugbank.com/drugs/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ASOd-protein10002|;;|entity-class|RO_0010002|https://go.drugbank.com/drugs/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'siRNAd-mRNA2430|;;|entity-entity|RO_0002430|https://go.drugbank.com/drugs/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'siRNA-mRNA2430|;;|entity-entity|RO_0002430|hhttp://web.mit.edu/sirna/sequences/results-|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'shRNA-mRNA2430|;;|entity-entity|RO_0002430|hhttp://web.mit.edu/sirna/sequences/results-|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'siRNAd-disease2606|;;|entity-class|RO_0002606|https://go.drugbank.com/drugs/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'aptamer-protein2436|;;|entity-class|RO_0002436|https://www.aptagen.com/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'aptamer-chemical2436|;;|entity-class|RO_0002436|https://www.aptagen.com/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'aptamerd-protein2436|;;|entity-class|RO_0002436|https://go.drugbank.com/drugs/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'aptamerd-disease2606|;;|entity-class|RO_0002606|https://go.drugbank.com/drugs/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'mRNAv-disease2606|;;|entity-class|RO_0002606|https://go.drugbank.com/drugs/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'riboswitch-protein2529|;;|entity-class|RO_0002529|https://tbdb.io/tboxes/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'riboswitch-bactStrain2434|;;|entity-class|RO_0002434|https://penchovsky.atwebpages.com/applications.php?page=58?|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'riboswitch-gobp56|;;|entity-class|RO_0000056|https://tbdb.io/tboxes/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ribozyme-gobp56|;;|entity-class|RO_0000056|http://rfamlive.xfam.org/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'viralRNA-ribozyme2526|;;|entity-entity|RO_0002526|https://www.ncbi.nlm.nih.gov/nuccore/|http://rfamlive.xfam.org/|t|0;1|None|None|None',\n",
       " 'circRNA-gocc1018|;;|entity-class|RO_0002526|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ribozyme-gobp56|;;|entity-class|RO_0000056|http://rfamlive.xfam.org/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ribozyme-gomf1025|;;|entity-class|RO_0001025|http://rfamlive.xfam.org/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ribozyme-gocc85|;;|entity-class|RO_0000085|http://rfamlive.xfam.org/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'circRNA-miRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'circRNA-premiRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/hairpin/|t|0;1|None|None|None',\n",
       " 'circRNA-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'circRNA-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'circRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'circRNA-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'eRNA-mRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lincRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lipid-ev1018|;;|class-class|RO_0001018|http://purl.obolibrary.org/obo/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-anatomy1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-cell1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-histoneModification2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://crdd.osdd.net/raghava/dbem?|t|0;1|None|None|None',\n",
       " 'lncRNA-lncRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-ncRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-pDeath56|;;|entity-class|RO_0000056|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-pseudogene2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-ribozyme2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-rRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-scaRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-viralmiRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'lncRNA-viralmRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'lncRNA-viralProtein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-ev1018|;;|entity-class|RO_0001018|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-miRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'miRNA-ncRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-othersRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-pDeath56|;;|entity-class|RO_0002434|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-protein2434|;;|entity-class|RO_0002434|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-pseudogene2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-ribozyme2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-scaRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-scRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-snRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-subCellularLocalization1025|;;|entity-class|RO_0002434|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-TF2434|;;|entity-class|RO_0002434|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-unknownRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-viralmiRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'miRNA-viralmRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'miRNA-viralProtein2434|;;|entity-class|RO_0002434|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-viralunRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/mature/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'mRNA-anatomy1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'mRNA-cell1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'mRNA-chemical2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'mRNA-disease3302|;;|entity-class|RO_0003302|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'mRNA-ev1018|;;|entity-class|RO_0001018|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'mRNA-gene2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'mRNA-histoneModification2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|ttp://crdd.osdd.net/raghava/dbem?|t|0;1|None|None|None',\n",
       " 'mRNA-mRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'mRNA-ncRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'mRNA-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'mRNA-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'mRNA-rRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'mRNA-scaRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'mRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'mRNA-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'mRNA-viralmiRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'mRNA-viralnsRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'mtRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ncRNA-histoneModification2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://crdd.osdd.net/raghava/dbem?|t|0;1|None|None|None',\n",
       " 'ncRNA-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ncRNA-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ncRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ncRNA-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'others-gene2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'others-histoneModification2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://crdd.osdd.net/raghava/dbem?|t|0;1|None|None|None',\n",
       " 'others-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'othersRNA-lncRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'othersRNA-mRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'othersRNA-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'othersRNA-pseudogene2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'othersRNA-rRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'others-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'others-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'other-viralmiRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'PCG-lncRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'piRNA-lncRNA2434|;;|entity-entity|RO_0002434|http://bigdata.ibp.ac.cn/piRBase/pirna.php?name=|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'piRNA-mRNA2434|;;|entity-entity|RO_0002434|http://bigdata.ibp.ac.cn/piRBase/pirna.php?name=|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'premiRNA-ev1018|;;|entity-class|RO_0001018|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-histoneModification2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/hairpin/|http://crdd.osdd.net/raghava/dbem?|t|0;1|None|None|None',\n",
       " 'premiRNA-mRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/hairpin/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'premiRNA-protein2434|;;|entity-class|RO_0002434|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-pseudogene2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/hairpin/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'premiRNA-RBP2434|;;|entity-class|RO_0002434|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-TF2434|;;|entity-class|RO_0002434|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-viralmiRNA2434|;;|entity-entity|RO_0002434|https://www.mirbase.org/hairpin/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'protein-epiMod2434|;;|class-class|RO_0002434|http://purl.obolibrary.org/obo/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'protein-ev1018|;;|class-class|RO_0001018|http://purl.obolibrary.org/obo/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'protein-viralmiRNA2434|;;|class-entity|RO_0002434|http://purl.obolibrary.org/obo/|https://www.mirbase.org/hairpin/|t|0;1|None|None|None',\n",
       " 'pseudo-chemical2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'pseudo-disease3302|;;|entity-class|RO_0003302|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'pseudogene-mRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'pseudogene-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'pseudogene-pseudogene2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'pseudogene-rRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'pseudo-histoneModification2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://crdd.osdd.net/raghava/dbem?|t|0;1|None|None|None',\n",
       " 'pseudo-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'pseudo-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'pseudo-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'pseudo-viralmiRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'pseudo-viralmRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'ribozyme-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ribozyme-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ribozyme-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'rRNA-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'rRNA-rRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'rRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'rRNA-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scaRNA-epiMod2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scaRNA-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scaRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scaRNA-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scRNA-disease3302|;;|entity-class|RO_0003302|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scRNA-mRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'scRNA-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scRNA-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scRNA-viralmiRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'snoRNA-chemical2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-disease3302|;;|entity-class|RO_0003302|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-epiMod2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-lncRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'snoRNA-pDeath56|;;|entity-class|RO_0000056|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-viralmiRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'snRNA-disease3302|;;|entity-class|RO_0003302|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snRNA-ev1018|;;|entity-class|RO_0001018|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snRNA-mRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'snRNA-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snRNA-pseudogene2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'snRNA-RBP2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snRNA-snRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'snRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snRNA-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snRNA-viralmiRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'snRNA-viralmRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'sRNA-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'TEC-chemical2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'tRF-lncRNA2434|;;|entity-entity|RO_0002434|http://genome.bioch.virginia.edu/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'tRF-mRNA2434|;;|entity-entity|RO_0002434|http://genome.bioch.virginia.edu/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'tRF-pseudogene2434|;;|entity-entity|RO_0002434|http://genome.bioch.virginia.edu/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'tRNA-lncRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'tRNA-mRNA_gtRNA2434|;;|entity-entity|RO_0002434|http://gtrnadb.ucsc.edu/genomes/eukaryota/Hsapi19/genes/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'tRNA-mRNA_NCBI2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://www.ncbi.nlm.nih.gov/gene/|t|0;1|None|None|None',\n",
       " 'tRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'tRNA-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'unknown-histoneModification2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://crdd.osdd.net/raghava/dbem?|t|0;1|None|None|None',\n",
       " 'unknownRNA-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'unknown-TF2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'unknown-viralmiRNA2434|;;|entity-entity|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|https://www.mirbase.org/mature/|t|0;1|None|None|None',\n",
       " 'vRNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'vtRNAs-protein2434|;;|entity-class|RO_0002434|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'Y_RNA-subCellularLocalization1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'antisenseRNA-go2327|;;|entity-class|RO_0002327|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ncRNA-go2331|;;|entity-class|RO_0002331|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'antisenseRNA-go2331|;;|entity-class|RO_0002331|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ncRNA-go2432|;;|entity-class|RO_0002432|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-go1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ncRNA-go4033|;;|entity-class|RO_0004033|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scaRNA-go1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-go2263|;;|entity-class|RO_0002263|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scaRNA-go2331|;;|entity-class|RO_0002331|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-go2327|;;|entity-class|RO_0002327|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'piRNA-go1025|;;|entity-class|RO_0001025|http://bigdata.ibp.ac.cn/piRBase/pirna.php?name=|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scRNA-go2331|;;|entity-class|RO_0002331|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-go2331|;;|entity-class|RO_0002331|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'piRNA-go2331|;;|entity-class|RO_0002331|http://bigdata.ibp.ac.cn/piRBase/pirna.php?name=|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-go2432|;;|entity-class|RO_0002432|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-go1025|;;|entity-class|RO_0001025|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-go1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-go4033|;;|entity-class|RO_0004033|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-go2263|;;|entity-class|RO_0002263|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-go2327|;;|entity-class|RO_0002327|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-go2327|;;|entity-class|RO_0002327|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snoRNA-go2331|;;|entity-class|RO_0002331|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-go1025|;;|entity-class|RO_0001025|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-go2331|;;|entity-class|RO_0002331|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snRNA-go2327|;;|entity-class|RO_0002427|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-go2263|;;|entity-class|RO_0002263|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snRNA-go2331|;;|entity-class|RO_0002331|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-go2264|;;|entity-class|RO_0002264|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-go2327|;;|entity-class|RO_0002327|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'RNAseMRP-go1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'teloRNA-go1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-go2331|;;|entity-class|RO_0002331|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'RNAseMRP-go2326|;;|entity-class|RO_0002326|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-go2432|;;|entity-class|RO_0002432|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'RNAseMRP-go2327|;;|entity-class|RO_0002327|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-go4035|;;|entity-class|RO_0004035|https://www.mirbase.org/mature/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'RNAseMRP-go2331|;;|entity-class|RO_0002331|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'teloRNA-go2327|;;|entity-class|RO_0002327|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ncRNA-go1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'RNAseP-go2327|;;|entity-class|RO_0002327|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'tRNA-go2331|;;|entity-class|RO_0002331|http://gtrnadb.ucsc.edu/genomes/eukaryota/Hsapi19/genes/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ncRNA-go2263|;;|entity-class|RO_0002263|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'RNAseP-go2331|;;|entity-class|RO_0002331|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'tRNA-go2327|;;|entity-class|RO_0002327|http://gtrnadb.ucsc.edu/genomes/eukaryota/Hsapi19/genes/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ncRNA-go2327|;;|entity-class|RO_0002327|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'rRNA-go2327|;;|entity-class|RO_0002327|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'rRNA-go1025|;;|entity-class|RO_0001025|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ribozyme-go2327|;;|entity-class|RO_0002327|http://rfamlive.xfam.org/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'teloRNA-go2325|;;|entity-class|RO_0002325|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'teloRNA-go2326|;;|entity-class|RO_0002326|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'teloRNA-go2331|;;|entity-class|RO_0002331|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'ncRNA-goBFO50|;;|entity-class|BFO_0000050|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'scRNA-goBFO50|;;|entity-class|BFO_0000050|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'lncRNA-goBFO50|;;|entity-class|BFO_0000050|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'premiRNA-goBFO50|;;|entity-class|BFO_0000050|https://www.mirbase.org/hairpin/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'snRNA-goBFO50|;;|entity-class|BFO_0000050|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'miRNA-goBFO50|;;|entity-class|BFO_0000050|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'RNAseMRP-goBFO50|;;|entity-class|BFO_0000050|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'teloRNA-goBFO50|;;|entity-class|BFO_0000050|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'RNAseP-goBFO50|;;|entity-class|BFO_0000050|http://www.ncbi.nlm.nih.gov/gene/|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'piRNA-disease3302|;;|entity-class|RO_0003302|http://bigdata.ibp.ac.cn/piRBase/pirna.php?name=|http://purl.obolibrary.org/obo/|t|0;1|None|None|None',\n",
       " 'variant-piRNA2566|;;|entity-entity|RO_0002566|https://www.ncbi.nlm.nih.gov/snp/|http://bigdata.ibp.ac.cn/piRBase/pirna.php?name=|t|0;1|None|None|None']"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "ont.resource_info"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "id": "Vb_LRd2kRYRT"
   },
   "source": [
    "<br>\n",
    "\n",
    "### Edge Data   <a class=\"anchor\" id=\"download-edge-data\"></a>\n",
    "In PheKnowLator, classes are nodes that originate from ontologies. Class data sources are Linked Data sources that are used to create edges in the knowledge graph and thus can connect to other class data sources. Sometimes we want to add data that is not already part of an ontology. In that case, data either be added as an `instance` of an existing ontology class or as its own `owl:class` by being added to the knowledge graph as a `subclass` of an existing `owl:class`."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {
    "id": "Im-rQ4rmRYRV"
   },
   "outputs": [],
   "source": [
    "edges = LinkedData('resources/edge_source_list.txt', 'resources/resource_info.txt')\n",
    "\n",
    "edges.parses_resource_file()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {
    "id": "2aMyW0lbRYRW",
    "outputId": "239e11f4-9611-4459-bc02-00c47e534c1a"
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\n",
      "*** Generating Metadata ***\n",
      "\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "100%|██████████| 322/322 [00:00<00:00, 11391.99it/s]\n",
      "100%|██████████| 322/322 [00:00<00:00, 105208.84it/s]\n"
     ]
    }
   ],
   "source": [
    "edges.data_files = edges.source_list\n",
    "edges.generates_source_metadata()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "id": "n41xNZziRYRX",
    "outputId": "44607b8b-d47e-44d7-cb2d-035a4f2fa90a"
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "100%|██████████| 322/322 [00:00<00:00, 88370.47it/s]\n"
     ]
    }
   ],
   "source": [
    "edges._writes_source_metadata_locally()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {
    "id": "P2SZ6dGIRYRX",
    "outputId": "371dabe2-3808-4eef-b5d4-1766eb0f77f0"
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "dict_keys(['variant-miRNA2566', 'variant-premiRNA2566', 'variant-gene2566', 'variant-disease2566', 'variant-TF2566_1', 'variant-TF2566_2', 'variant-TF2566_3', 'variant-TF2566_4', 'miRNA-mRNA11002_1', 'miRNA-mRNA11002_2', 'miRNA-mRNA11002_3', 'miRNA-mRNA2434', 'lncRNA-mRNA2434_1', 'lncRNA-mRNA2434_2', 'lncRNA-mRNA2434_3', 'lncRNA-mRNA2434_4', 'premiRNA-miRNA2203', 'premiRNA-premiRNAHOM0', 'premiRNA-AtoI2434', 'miRNA-gene11002', 'miRNA-gene2449', 'miRNA-gene11016', 'miRNA-gene2450', 'miRNA-gene11013', 'premiRNA-mRNA11002', 'miRNA-pseudogene11002', 'miRNA-epiModclass2434', 'premiRNA-epiModclass2434', 'miRNA-epiMod2434', 'premiRNA-epiMod2434', 'premiRNA-disease3302', 'miRNA-disease3302', 'miRNA-lncRNA2434', 'premiRNA-lncRNA2434', 'miRNA-tsRNA2434', 'tsRNA-disease3302', 'tRF-tRNA_tRFdb2202', 'tRF-tRNA_MINTbase2202', 'tRF-cellLine1025', 'tRNA-modification2434', 'tRNA-aminoacid2436', 'snoRNA-gene2434', 'snoRNA-miRNA2434', 'snoRNA-premiRNA2434', 'snoRNA-snoRNA2434', 'snoRNA-snRNA2434', 'snoRNA-rRNA2434', 'snoRNA-mRNA2434', 'snoRNA-tRNA2434', 'snoRNA-retainedIntron2434', 'snoRNA-miscRNA2434', 'snoRNA-pseudogene2434', 'snoRNA-scaRNA2434', 'snoRNA-lncRNA2434', 'lncRNA-gene2434', 'lncRNA-disease3302', 'circRNA-disease3302', 'lncRNA-chemical2434', 'smallProtein-lncRNA2204', 'lncRNA-protein2434', 'lncRNA-biologicalContext2245', 'lncRNA-biologicalContext2246', 'lncRNA-biologicalContext2291', 'lncRNA-role2260', 'lncRNA-gocc1018', 'lncRNA-pw56', 'lncRNA-gobp56', 'premiRNA-TF2528', 'premiRNA-TF2529', 'premiRNA-TF2428', 'premiRNA-gomf85', 'miRNA-gomf85', 'miRNA-gobp56', 'miRNA-reactome56', 'miRNA-wikipathwayspw56', 'premiRNA-premiRNA2434', 'premiRNA-anatomy1025', 'chemical-miRNA2434', 'chemical-premiRNA2434', 'gRNA-gene11007', 'ASO-mRNA3002', 'ASOd-mRNA2430', 'ASOd-disease2606', 'ASOd-protein11007', 'ASOd-protein10002', 'siRNAd-mRNA2430', 'siRNA-mRNA2430', 'shRNA-mRNA2430', 'siRNAd-disease2606', 'aptamer-protein2436', 'aptamer-chemical2436', 'aptamerd-protein2436', 'aptamerd-disease2606', 'mRNAv-disease2606', 'riboswitch-protein2529', 'riboswitch-bactStrain2434', 'riboswitch-gobp56', 'ribozyme-gobp56', 'viralRNA-ribozyme2526', 'circRNA-gocc1018', 'ribozyme-gomf1025', 'ribozyme-gocc85', 'circRNA-miRNA2434', 'circRNA-premiRNA2434', 'circRNA-protein2434', 'circRNA-RBP2434', 'circRNA-subCellularLocalization1025', 'circRNA-TF2434', 'eRNA-mRNA2434', 'lincRNA-subCellularLocalization1025', 'lipid-ev1018', 'lncRNA-anatomy1025', 'lncRNA-cell1025', 'lncRNA-histoneModification2434', 'lncRNA-lncRNA2434', 'lncRNA-ncRNA2434', 'lncRNA-pDeath56', 'lncRNA-pseudogene2434', 'lncRNA-RBP2434', 'lncRNA-ribozyme2434', 'lncRNA-rRNA2434', 'lncRNA-scaRNA2434', 'lncRNA-subCellularLocalization1025', 'lncRNA-TF2434', 'lncRNA-viralmiRNA2434', 'lncRNA-viralmRNA2434', 'lncRNA-viralProtein2434', 'miRNA-ev1018', 'miRNA-miRNA2434', 'miRNA-ncRNA2434', 'miRNA-othersRNA2434', 'miRNA-pDeath56', 'miRNA-protein2434', 'miRNA-pseudogene2434', 'miRNA-ribozyme2434', 'miRNA-scaRNA2434', 'miRNA-scRNA2434', 'miRNA-snRNA2434', 'miRNA-subCellularLocalization1025', 'miRNA-TF2434', 'miRNA-unknownRNA2434', 'miRNA-viralmiRNA2434', 'miRNA-viralmRNA2434', 'miRNA-viralProtein2434', 'miRNA-viralunRNA2434', 'mRNA-anatomy1025', 'mRNA-cell1025', 'mRNA-chemical2434', 'mRNA-disease3302', 'mRNA-ev1018', 'mRNA-gene2434', 'mRNA-histoneModification2434', 'mRNA-mRNA2434', 'mRNA-ncRNA2434', 'mRNA-protein2434', 'mRNA-RBP2434', 'mRNA-rRNA2434', 'mRNA-scaRNA2434', 'mRNA-subCellularLocalization1025', 'mRNA-TF2434', 'mRNA-viralmiRNA2434', 'mRNA-viralnsRNA2434', 'mtRNA-subCellularLocalization1025', 'ncRNA-histoneModification2434', 'ncRNA-protein2434', 'ncRNA-RBP2434', 'ncRNA-subCellularLocalization1025', 'ncRNA-TF2434', 'others-gene2434', 'others-histoneModification2434', 'others-RBP2434', 'othersRNA-lncRNA2434', 'othersRNA-mRNA2434', 'othersRNA-protein2434', 'othersRNA-pseudogene2434', 'othersRNA-rRNA2434', 'others-subCellularLocalization1025', 'others-TF2434', 'other-viralmiRNA2434', 'PCG-lncRNA2434', 'piRNA-lncRNA2434', 'piRNA-mRNA2434', 'premiRNA-ev1018', 'premiRNA-histoneModification2434', 'premiRNA-mRNA2434', 'premiRNA-protein2434', 'premiRNA-pseudogene2434', 'premiRNA-RBP2434', 'premiRNA-subCellularLocalization1025', 'premiRNA-TF2434', 'premiRNA-viralmiRNA2434', 'protein-epiMod2434', 'protein-ev1018', 'protein-viralmiRNA2434', 'pseudo-chemical2434', 'pseudo-disease3302', 'pseudogene-mRNA2434', 'pseudogene-protein2434', 'pseudogene-pseudogene2434', 'pseudogene-rRNA2434', 'pseudo-histoneModification2434', 'pseudo-RBP2434', 'pseudo-subCellularLocalization1025', 'pseudo-TF2434', 'pseudo-viralmiRNA2434', 'pseudo-viralmRNA2434', 'ribozyme-protein2434', 'ribozyme-RBP2434', 'ribozyme-TF2434', 'rRNA-RBP2434', 'rRNA-rRNA2434', 'rRNA-subCellularLocalization1025', 'rRNA-TF2434', 'scaRNA-epiMod2434', 'scaRNA-RBP2434', 'scaRNA-subCellularLocalization1025', 'scaRNA-TF2434', 'scRNA-disease3302', 'scRNA-mRNA2434', 'scRNA-protein2434', 'scRNA-RBP2434', 'scRNA-subCellularLocalization1025', 'scRNA-viralmiRNA2434', 'snoRNA-chemical2434', 'snoRNA-disease3302', 'snoRNA-epiMod2434', 'snoRNA-pDeath56', 'snoRNA-protein2434', 'snoRNA-RBP2434', 'snoRNA-subCellularLocalization1025', 'snoRNA-TF2434', 'snoRNA-viralmiRNA2434', 'snRNA-disease3302', 'snRNA-ev1018', 'snRNA-mRNA2434', 'snRNA-protein2434', 'snRNA-pseudogene2434', 'snRNA-RBP2434', 'snRNA-snRNA2434', 'snRNA-subCellularLocalization1025', 'snRNA-TF2434', 'snRNA-viralmiRNA2434', 'snRNA-viralmRNA2434', 'sRNA-TF2434', 'TEC-chemical2434', 'tRF-lncRNA2434', 'tRF-mRNA2434', 'tRF-pseudogene2434', 'tRNA-lncRNA2434', 'tRNA-mRNA_gtRNA2434', 'tRNA-mRNA_NCBI2434', 'tRNA-subCellularLocalization1025', 'tRNA-TF2434', 'unknown-histoneModification2434', 'unknownRNA-protein2434', 'unknown-TF2434', 'unknown-viralmiRNA2434', 'vRNA-subCellularLocalization1025', 'vtRNAs-protein2434', 'Y_RNA-subCellularLocalization1025', 'antisenseRNA-go2327', 'ncRNA-go2331', 'rRNA-go1025', 'antisenseRNA-go2331', 'ncRNA-go2432', 'rRNA-go2327', 'lncRNA-go1025', 'ncRNA-go4033', 'scaRNA-go1025', 'lncRNA-go2263', 'ncRNA-goBFO50', 'scaRNA-go2331', 'lncRNA-go2327', 'piRNA-go1025', 'scRNA-go2331', 'lncRNA-go2331', 'piRNA-go2331', 'scRNA-goBFO50', 'lncRNA-go2432', 'premiRNA-go1025', 'snoRNA-go1025', 'lncRNA-go4033', 'premiRNA-go2263', 'snoRNA-go2327', 'lncRNA-goBFO50', 'premiRNA-go2327', 'snoRNA-go2331', 'miRNA-go1025', 'premiRNA-go2331', 'snRNA-go2327', 'miRNA-go2263', 'premiRNA-goBFO50', 'snRNA-go2331', 'miRNA-go2264', 'ribozyme-go2327', 'snRNA-goBFO50', 'miRNA-go2327', 'RNAseMRP-go1025', 'teloRNA-go1025', 'miRNA-go2331', 'RNAseMRP-go2326', 'teloRNA-go2325', 'miRNA-go2432', 'RNAseMRP-go2327', 'teloRNA-go2326', 'miRNA-go4035', 'RNAseMRP-go2331', 'teloRNA-go2327', 'miRNA-goBFO50', 'RNAseMRP-goBFO50', 'teloRNA-go2331', 'ncRNA-go1025', 'RNAseP-go2327', 'teloRNA-goBFO50', 'ncRNA-go2263', 'RNAseP-go2331', 'tRNA-go2327', 'ncRNA-go2327', 'RNAseP-goBFO50', 'tRNA-go2331', 'piRNA-disease3302', 'variant-piRNA2566'])"
      ]
     },
     "execution_count": 9,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "edges.source_list.keys()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "id": "7LjcaJ3MRYRY"
   },
   "source": [
    "***\n",
    "\n",
    "## Create Edge Lists <a class=\"anchor\" id=\"create-edges\"></a>\n",
    "\n",
    "**Wiki Page:** **[`Data Sources`](https://github.com/callahantiff/PheKnowLator/wiki/v2-Data-Sources)**\n",
    "\n",
    "<br>\n",
    "\n",
    "**Purpose:** The code below will take the dictionaries of processed data described above and use them to create edge lists for each of the edge types specified in the [`resource_info.txt`](https://github.com/emanuelecavalleri/testRNA-KG/blob/master/resources/resource_info.txt). Each edge list will be appended to a nested dictionary (see details below).\n",
    "\n",
    "<br>\n",
    "\n",
    "**Assumptions:**  \n",
    "1. All `ontology` and `edge` data sources have been downloaded.   \n",
    "\n",
    "2. All code in the [`RNA-KG_Preparation.ipynb`](https://github.com/AnacletoLAB/RNA-KG/blob/main/notebooks/RNA-KG_Preparation.ipynb), [`inteRNA-KG_Preparation.ipynb`](https://github.com/AnacletoLAB/RNA-KG/blob/main/notebooks/inteRNA-KG_Preparation.ipynb), and [`non-ontological_RNAentities.ipynb`](https://github.com/AnacletoLAB/RNA-KG/blob/main/notebooks/non-ontological_RNAentities.ipynb) Jupyter Notebooks has been run. These Notebooks contain code needed to generate all mapping, filtering, and label data.\n",
    "\n",
    "<br>\n",
    "\n",
    "**Output:** `Master_Edge_List_Dict.json`. Below is an example of what the `Master Edge Dictionary` contains for each processed resource:  \n",
    "```python\n",
    "master_edges = {'miRNA-disease'  :\n",
    "                {'source_labels'    : ';;',\n",
    "                 'data_type'        : 'entity-class',\n",
    "                 'edge_relation'    : 'RO_0003302',\n",
    "                 'uri'              : ('https://www.mirbase.org/mature/',\n",
    "                                       'http://purl.obolibrary.org/obo/'),\n",
    "                 'delimiter'        : 't',\n",
    "                 'column_idx'       : '2;1',\n",
    "                 'identifier_maps'  : '0:./[...]/MIRNA_MIRBASE_MAP.txt;1:./[...]/DOID_MONDO_MAP.txt',\n",
    "                 'evidence_criteria': 'None',\n",
    "                 'filter_criteria'  : 'None',\n",
    "                 'edge_list'        : ['...']}\n",
    "```\n",
    "\n",
    "***"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {
    "id": "uIAMaU5bRYRa",
    "outputId": "81f1c859-4915-4cf3-d967-e0d22552b8c1"
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "2024-02-22 13:50:54,014\tINFO worker.py:1625 -- Started a local Ray instance.\n"
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       "                    c5.6-0.2,10-4.9,9.8-10.5c-0.1-5.4-4.5-9.7-9.9-9.6C19.6,62.3,19.5,62.3,19.5,62.3z M71.8,134.6c5.9,0.2,10.3-3.9,10.4-9.6\n",
       "                    c0.5-5.5-3.6-10.4-9.1-10.8c-5.5-0.5-10.4,3.6-10.8,9.1c0,0.5,0,0.9,0,1.4c-0.2,5.3,4,9.8,9.3,10\n",
       "                    C71.6,134.6,71.7,134.6,71.8,134.6z\"/>\n",
       "            </g>\n",
       "        </svg>\n",
       "        <table>\n",
       "            <tr>\n",
       "                <td style=\"text-align: left\"><b>Python version:</b></td>\n",
       "                <td style=\"text-align: left\"><b>3.10.12</b></td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                <td style=\"text-align: left\"><b>Ray version:</b></td>\n",
       "                <td style=\"text-align: left\"><b> 2.4.0</b></td>\n",
       "            </tr>\n",
       "            \n",
       "        </table>\n",
       "    </div>\n",
       "</div>\n"
      ],
      "text/plain": [
       "RayContext(dashboard_url='', python_version='3.10.12', ray_version='2.4.0', ray_commit='4479f66d4db967d3c9dd0af2572061276ba926ba', address_info={'node_ip_address': '159.149.147.185', 'raylet_ip_address': '159.149.147.185', 'redis_address': None, 'object_store_address': '/tmp/ray/session_2024-02-22_13-50-51_682865_2237051/sockets/plasma_store', 'raylet_socket_name': '/tmp/ray/session_2024-02-22_13-50-51_682865_2237051/sockets/raylet', 'webui_url': '', 'session_dir': '/tmp/ray/session_2024-02-22_13-50-51_682865_2237051', 'metrics_export_port': 65346, 'gcs_address': '159.149.147.185:48466', 'address': '159.149.147.185:48466', 'dashboard_agent_listen_port': 52365, 'node_id': 'a48737cd6c5055e52e19e8a9259a9d26a0f317ab38e53c76e4ef93d5'})"
      ]
     },
     "execution_count": 10,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "import psutil\n",
    "# set-up environment for parallel processing -- even if running program serially these steps are needed\n",
    "cpus = psutil.cpu_count(logical=True)\n",
    "#ray.shutdown()\n",
    "ray.init()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "id": "FbaDnELoRYRb",
    "outputId": "9de034d7-dc44-4869-9be0-159598db6c78"
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238949)\u001b[0m Finished Edge: variant-miRNA2566 (variant = 77, miRNA2566 = 91); 101 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238949)\u001b[0m Finished Edge: premiRNA-miRNA2203 (premiRNA = 1917, miRNA2203 = 2656); 2879 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: snoRNA-retainedIntron2434 (snoRNA = 25, retainedIntron2434 = 6); 31 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: lncRNA-pw56 (lncRNA = 46, pw56 = 13); 58 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: ASOd-mRNA2430 (ASOd = 7, mRNA2430 = 4); 7 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: ribozyme-gobp56 (ribozyme = 3, gobp56 = 2); 3 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238949)\u001b[0m Finished Edge: miRNA-lncRNA2434 (miRNA = 2727, lncRNA2434 = 822); 14855 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: mRNA-anatomy1025 (mRNA = 3, anatomy1025 = 3); 3 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238949)\u001b[0m Finished Edge: ASO-mRNA3002 (ASO = 2633, mRNA3002 = 16); 2678 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: mRNA-viralnsRNA2434 (mRNA = 2, viralnsRNA2434 = 1); 2 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238949)\u001b[0m Finished Edge: riboswitch-gobp56 (riboswitch = 13072, gobp56 = 111); 13072 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: others-TF2434 (others = 541, TF2434 = 152); 11851 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: protein-viralmiRNA2434 (protein = 11, viralmiRNA2434 = 18); 21 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: rRNA-RBP2434 (rRNA = 19, RBP2434 = 9); 30 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: snRNA-viralmiRNA2434 (snRNA = 2, viralmiRNA2434 = 1); 2 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: vRNA-subCellularLocalization1025 (vRNA = 3, subCellularLocalization1025 = 2); 6 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: piRNA-go1025 (piRNA = 1, go1025 = 1); 1 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238950)\u001b[0m Finished Edge: snRNA-go2327 (snRNA = 1, go2327 = 1); 1 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238949)\u001b[0m Finished Edge: unknown-viralmiRNA2434 (unknown = 3, viralmiRNA2434 = 1); 3 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238949)\u001b[0m Finished Edge: teloRNA-go2326 (teloRNA = 1, go2326 = 3); 3 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238954)\u001b[0m Finished Edge: variant-TF2566_2 (variant = 515690, TF2566_2 = 12); 515845 unique edges\u001b[32m [repeated 8x across cluster] (Ray deduplicates logs by default. Set RAY_DEDUP_LOGS=0 to disable log deduplication, or see https://docs.ray.io/en/master/ray-observability/ray-logging.html#log-deduplication for more options.)\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238951)\u001b[0m Finished Edge: premiRNA-AtoI2434 (premiRNA = 4, AtoI2434 = 1); 4 unique edges\u001b[32m [repeated 4x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238951)\u001b[0m Finished Edge: viralRNA-ribozyme2526 (viralRNA = 5654, ribozyme2526 = 6); 5896 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238951)\u001b[0m Finished Edge: mtRNA-subCellularLocalization1025 (mtRNA = 10, subCellularLocalization1025 = 2); 19 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238951)\u001b[0m Finished Edge: other-viralmiRNA2434 (other = 1, viralmiRNA2434 = 1); 1 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238951)\u001b[0m Finished Edge: pseudo-chemical2434 (pseudo = 83, chemical2434 = 8); 85 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238951)\u001b[0m Finished Edge: vtRNAs-protein2434 (vtRNAs = 1, protein2434 = 1); 1 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238951)\u001b[0m Finished Edge: scRNA-go2331 (scRNA = 3, go2331 = 1); 3 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238951)\u001b[0m Finished Edge: RNAseMRP-go2331 (RNAseMRP = 1, go2331 = 4); 4 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238951)\u001b[0m Finished Edge: snoRNA-pDeath56 (snoRNA = 1, pDeath56 = 1); 1 unique edges\u001b[32m [repeated 6x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238960)\u001b[0m Finished Edge: lncRNA-protein2434 (lncRNA = 8451, protein2434 = 507); 19035 unique edges\u001b[32m [repeated 7x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238951)\u001b[0m Finished Edge: miRNA-mRNA11002_1 (miRNA = 730, mRNA11002_1 = 15557); 214754 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238949)\u001b[0m Finished Edge: miRNA-mRNA11002_1 (miRNA = 730, mRNA11002_1 = 15557); 214754 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238960)\u001b[0m Finished Edge: aptamerd-protein2436 (aptamerd = 3, protein2436 = 5); 5 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238960)\u001b[0m Finished Edge: circRNA-TF2434 (circRNA = 33, TF2434 = 6); 33 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238957)\u001b[0m Finished Edge: tRNA-aminoacid2436 (tRNA = 549, aminoacid2436 = 19); 549 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238958)\u001b[0m Finished Edge: aptamer-protein2436 (aptamer = 75, protein2436 = 95); 117 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238956)\u001b[0m Finished Edge: miRNA-gene11013 (miRNA = 323, gene11013 = 15598); 92582 unique edges\u001b[32m [repeated 13x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238957)\u001b[0m Finished Edge: siRNAd-disease2606 (siRNAd = 4, disease2606 = 4); 6 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238957)\u001b[0m Finished Edge: scaRNA-TF2434 (scaRNA = 17, TF2434 = 83); 429 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238957)\u001b[0m Finished Edge: ncRNA-go2432 (ncRNA = 1, go2432 = 1); 1 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238957)\u001b[0m Finished Edge: mRNA-mRNA2434 (mRNA = 4459, mRNA2434 = 4459); 7035 unique edges\u001b[32m [repeated 4x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238962)\u001b[0m Finished Edge: chemical-miRNA2434 (chemical = 262, miRNA2434 = 934); 5279 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238962)\u001b[0m Finished Edge: mRNAv-disease2606 (mRNAv = 3, disease2606 = 6); 6 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238962)\u001b[0m Finished Edge: lincRNA-subCellularLocalization1025 (lincRNA = 22, subCellularLocalization1025 = 5); 28 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238957)\u001b[0m Finished Edge: RNAseP-go2327 (RNAseP = 1, go2327 = 1); 1 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238962)\u001b[0m Finished Edge: othersRNA-protein2434 (othersRNA = 12, protein2434 = 2); 12 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238957)\u001b[0m Finished Edge: others-gene2434 (others = 1, gene2434 = 2); 2 unique edges\u001b[32m [repeated 3x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238949)\u001b[0m Finished Edge: miRNA-epiModclass2434 (miRNA = 535, epiModclass2434 = 13); 1137 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238959)\u001b[0m Finished Edge: smallProtein-lncRNA2204 (smallProtein = 8050, lncRNA2204 = 790); 8283 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238958)\u001b[0m Finished Edge: rRNA-go2327 (rRNA = 22, go2327 = 1); 22 unique edges\u001b[32m [repeated 2x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238957)\u001b[0m Finished Edge: snRNA-disease3302 (snRNA = 8, disease3302 = 12); 15 unique edges\u001b[32m [repeated 4x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238949)\u001b[0m Finished Edge: smallProtein-lncRNA2204 (smallProtein = 8050, lncRNA2204 = 790); 8283 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238961)\u001b[0m Finished Edge: eRNA-mRNA2434 (eRNA = 3, mRNA2434 = 3); 5 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238963)\u001b[0m Finished Edge: riboswitch-protein2529 (riboswitch = 12715, protein2529 = 200); 41890 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238963)\u001b[0m Finished Edge: lipid-ev1018 (lipid = 35, ev1018 = 3); 47 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238963)\u001b[0m Finished Edge: ribozyme-protein2434 (ribozyme = 1, protein2434 = 2); 2 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238963)\u001b[0m Finished Edge: unknownRNA-protein2434 (unknownRNA = 1, protein2434 = 1); 1 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238964)\u001b[0m Finished Edge: gRNA-gene11007 (gRNA = 72, gene11007 = 42); 72 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238964)\u001b[0m Finished Edge: protein-epiMod2434 (protein = 32, epiMod2434 = 7); 33 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238954)\u001b[0m Finished Edge: tRF-tRNA_MINTbase2202 (tRF = 20473, tRNA_MINTbase2202 = 561); 113819 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238964)\u001b[0m Finished Edge: unknown-TF2434 (unknown = 1, TF2434 = 74); 74 unique edges\u001b[32m [repeated 2x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238962)\u001b[0m Finished Edge: teloRNA-go2325 (teloRNA = 1, go2325 = 1); 1 unique edges\u001b[32m [repeated 3x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238952)\u001b[0m Finished Edge: tsRNA-disease3302 (tsRNA = 4449, disease3302 = 31); 26602 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238952)\u001b[0m Finished Edge: ASOd-protein11007 (ASOd = 5, protein11007 = 11); 11 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238952)\u001b[0m Finished Edge: PCG-lncRNA2434 (PCG = 12, lncRNA2434 = 11); 12 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238952)\u001b[0m Finished Edge: sRNA-TF2434 (sRNA = 1, TF2434 = 74); 74 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238952)\u001b[0m Finished Edge: Y_RNA-subCellularLocalization1025 (Y_RNA = 4, subCellularLocalization1025 = 1); 4 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238954)\u001b[0m Finished Edge: piRNA-mRNA2434 (piRNA = 1, mRNA2434 = 1); 1 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238954)\u001b[0m Finished Edge: pseudogene-protein2434 (pseudogene = 44, protein2434 = 17); 54 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238954)\u001b[0m Finished Edge: tRF-lncRNA2434 (tRF = 18, lncRNA2434 = 6); 18 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238955)\u001b[0m Finished Edge: siRNA-mRNA2430 (siRNA = 77, mRNA2430 = 53); 77 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: premiRNA-TF2529 (premiRNA = 451, TF2529 = 64); 1752 unique edges\u001b[32m [repeated 20x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238960)\u001b[0m Finished Edge: pseudo-TF2434 (pseudo = 9524, TF2434 = 245); 188443 unique edges\u001b[32m [repeated 7x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: TEC-chemical2434 (TEC = 2, chemical2434 = 1); 2 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: antisenseRNA-go2327 (antisenseRNA = 1, go2327 = 1); 1 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238954)\u001b[0m Finished Edge: scRNA-goBFO50 (scRNA = 3, goBFO50 = 1); 3 unique edges\u001b[32m [repeated 7x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238954)\u001b[0m Finished Edge: RNAseMRP-goBFO50 (RNAseMRP = 1, goBFO50 = 2); 2 unique edges\u001b[32m [repeated 4x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: snoRNA-RBP2434 (snoRNA = 200, RBP2434 = 69); 751 unique edges\u001b[32m [repeated 16x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238956)\u001b[0m Finished Edge: shRNA-mRNA2430 (shRNA = 40, mRNA2430 = 40); 40 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238956)\u001b[0m Finished Edge: lncRNA-disease3302 (lncRNA = 2612, disease3302 = 756); 29984 unique edges\u001b[32m [repeated 27x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238961)\u001b[0m Finished Edge: shRNA-mRNA2430 (shRNA = 40, mRNA2430 = 40); 40 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238952)\u001b[0m Finished Edge: circRNA-gocc1018 (circRNA = 6, gocc1018 = 1); 6 unique edges\u001b[32m [repeated 5x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238960)\u001b[0m Finished Edge: tRNA-subCellularLocalization1025 (tRNA = 1, subCellularLocalization1025 = 1); 1 unique edges\u001b[32m [repeated 8x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238959)\u001b[0m Finished Edge: shRNA-mRNA2430 (shRNA = 40, mRNA2430 = 40); 40 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238956)\u001b[0m Finished Edge: miRNA-gomf85 (miRNA = 315, gomf85 = 485); 3400 unique edges\u001b[32m [repeated 29x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238954)\u001b[0m Finished Edge: shRNA-mRNA2430 (shRNA = 40, mRNA2430 = 40); 40 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238954)\u001b[0m Finished Edge: scaRNA-epiMod2434 (scaRNA = 21, epiMod2434 = 4); 21 unique edges\u001b[32m [repeated 3x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: ncRNA-protein2434 (ncRNA = 12, protein2434 = 2); 12 unique edges\u001b[32m [repeated 8x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: mRNA-disease3302 (mRNA = 421, disease3302 = 96); 513 unique edges\u001b[32m [repeated 9x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238963)\u001b[0m Finished Edge: shRNA-mRNA2430 (shRNA = 40, mRNA2430 = 40); 40 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238960)\u001b[0m Finished Edge: RNAseP-go2331 (RNAseP = 1, go2331 = 1); 1 unique edges\u001b[32m [repeated 2x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238964)\u001b[0m Finished Edge: othersRNA-rRNA2434 (othersRNA = 1, rRNA2434 = 1); 1 unique edges\u001b[32m [repeated 4x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238959)\u001b[0m Finished Edge: shRNA-mRNA2430 (shRNA = 40, mRNA2430 = 40); 40 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: rRNA-TF2434 (rRNA = 26, TF2434 = 55); 713 unique edges\u001b[32m [repeated 2x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: snRNA-go2331 (snRNA = 1, go2331 = 1); 1 unique edges\u001b[32m [repeated 7x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238964)\u001b[0m Finished Edge: shRNA-mRNA2430 (shRNA = 40, mRNA2430 = 40); 40 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: ribozyme-gomf1025 (ribozyme = 5, gomf1025 = 2); 5 unique edges\u001b[32m [repeated 3x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: tRF-tRNA_tRFdb2202 (tRF = 153, tRNA_tRFdb2202 = 294); 985 unique edges\u001b[32m [repeated 2x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238952)\u001b[0m Finished Edge: shRNA-mRNA2430 (shRNA = 40, mRNA2430 = 40); 40 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: shRNA-mRNA2430 (shRNA = 40, mRNA2430 = 40); 40 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: piRNA-go2331 (piRNA = 1, go2331 = 1); 1 unique edges\u001b[32m [repeated 2x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238953)\u001b[0m Finished Edge: miRNA-scaRNA2434 (miRNA = 8, scaRNA2434 = 7); 10 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238956)\u001b[0m Finished Edge: pseudogene-rRNA2434 (pseudogene = 5, rRNA2434 = 3); 5 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238955)\u001b[0m Finished Edge: premiRNA-ev1018 (premiRNA = 22, ev1018 = 2); 25 unique edges\u001b[32m [repeated 3x across cluster]\u001b[0m\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238955)\u001b[0m Finished Edge: teloRNA-go2331 (teloRNA = 1, go2331 = 3); 3 unique edges\n",
      "\u001b[2m\u001b[36m(CreatesEdgeList pid=2238956)\u001b[0m Finished Edge: teloRNA-go2331 (teloRNA = 1, go2331 = 3); 3 unique edges\n"
     ]
    }
   ],
   "source": [
    "# combine data sources\n",
    "combined_edges = dict(edges.data_files, **ont.data_files)\n",
    "resource_info_loc = './resources/resource_info.txt'\n",
    "\n",
    "# initialize edge dictionary class\n",
    "master_edges = CreatesEdgeList(data_files=combined_edges, source_file=resource_info_loc)\n",
    "master_edges.runs_creates_knowledge_graph_edges(source_file=resource_info_loc, data_files=combined_edges, cpus=cpus)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "id": "fKakdcBRRYRc"
   },
   "source": [
    "**Preview Master Edge Data**  \n",
    "Generate a table that includes each `edge-type`, its primary `relation`, example identifiers, and count of unique edges."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "dict_keys(['lncRNA-mRNA2434_4', 'miRNA-disease3302', 'snoRNA-mRNA2434', 'lncRNA-role2260', 'gRNA-gene11007', 'riboswitch-bactStrain2434', 'lncRNA-anatomy1025', 'miRNA-ev1018', 'miRNA-viralProtein2434', 'mRNA-TF2434', 'othersRNA-rRNA2434', 'protein-epiMod2434', 'ribozyme-RBP2434', 'snoRNA-chemical2434', 'snRNA-subCellularLocalization1025', 'unknown-TF2434', 'scaRNA-go2331', 'miRNA-go1025', 'RNAseMRP-go2327', 'tRNA-go2331', 'lncRNA-mRNA2434_3', 'premiRNA-disease3302', 'snoRNA-rRNA2434', 'lncRNA-biologicalContext2291', 'chemical-premiRNA2434', 'riboswitch-protein2529', 'lipid-ev1018', 'lncRNA-viralProtein2434', 'miRNA-viralmRNA2434', 'mRNA-subCellularLocalization1025', 'othersRNA-pseudogene2434', 'premiRNA-viralmiRNA2434', 'ribozyme-protein2434', 'scRNA-viralmiRNA2434', 'snRNA-snRNA2434', 'unknownRNA-protein2434', 'snoRNA-go2331', 'miRNA-go2432', 'ncRNA-goBFO50', 'RNAseP-goBFO50', 'lncRNA-mRNA2434_2', 'premiRNA-epiMod2434', 'snoRNA-snRNA2434', 'lncRNA-biologicalContext2246', 'chemical-miRNA2434', 'mRNAv-disease2606', 'lincRNA-subCellularLocalization1025', 'lncRNA-viralmRNA2434', 'miRNA-viralmiRNA2434', 'mRNA-scaRNA2434', 'othersRNA-protein2434', 'premiRNA-TF2434', 'pseudo-viralmRNA2434', 'scRNA-subCellularLocalization1025', 'snRNA-RBP2434', 'unknown-histoneModification2434', 'lncRNA-go2263', 'premiRNA-go2327', 'ncRNA-go2327', 'teloRNA-go2325', 'lncRNA-mRNA2434_1', 'miRNA-epiMod2434', 'snoRNA-snoRNA2434', 'lncRNA-biologicalContext2245', 'premiRNA-anatomy1025', 'aptamerd-disease2606', 'eRNA-mRNA2434', 'lncRNA-viralmiRNA2434', 'miRNA-unknownRNA2434', 'mRNA-rRNA2434', 'othersRNA-mRNA2434', 'premiRNA-subCellularLocalization1025', 'pseudo-viralmiRNA2434', 'scRNA-RBP2434', 'snRNA-pseudogene2434', 'tRNA-TF2434', 'scaRNA-go1025', 'RNAseMRP-go2326', 'tRNA-go2327', 'lncRNA-goBFO50', 'miRNA-mRNA2434', 'premiRNA-epiModclass2434', 'snoRNA-premiRNA2434', 'lncRNA-protein2434', 'premiRNA-premiRNA2434', 'aptamerd-protein2436', 'circRNA-TF2434', 'lncRNA-TF2434', 'miRNA-TF2434', 'mRNA-RBP2434', 'othersRNA-lncRNA2434', 'premiRNA-RBP2434', 'pseudo-TF2434', 'scRNA-protein2434', 'snRNA-protein2434', 'tRNA-subCellularLocalization1025', 'ncRNA-go4033', 'snoRNA-go2327', 'miRNA-go2331', 'RNAseP-go2331', 'miRNA-mRNA11002_3', 'miRNA-epiModclass2434', 'snoRNA-miRNA2434', 'smallProtein-lncRNA2204', 'miRNA-wikipathwayspw56', 'aptamer-chemical2436', 'circRNA-subCellularLocalization1025', 'lncRNA-subCellularLocalization1025', 'miRNA-subCellularLocalization1025', 'mRNA-protein2434', 'others-RBP2434', 'premiRNA-pseudogene2434', 'pseudo-subCellularLocalization1025', 'scRNA-mRNA2434', 'snRNA-mRNA2434', 'tRNA-mRNA_NCBI2434', 'lncRNA-go1025', 'premiRNA-go2263', 'teloRNA-go1025', 'ncRNA-go2263', 'miRNA-mRNA11002_2', 'miRNA-pseudogene11002', 'snoRNA-gene2434', 'lncRNA-chemical2434', 'miRNA-reactome56', 'aptamer-protein2436', 'circRNA-RBP2434', 'lncRNA-scaRNA2434', 'miRNA-snRNA2434', 'mRNA-ncRNA2434', 'others-histoneModification2434', 'premiRNA-protein2434', 'pseudo-RBP2434', 'scRNA-disease3302', 'snRNA-ev1018', 'tRNA-mRNA_gtRNA2434', 'lncRNA-go4033', 'RNAseMRP-go1025', 'rRNA-go2327', 'teloRNA-goBFO50', 'miRNA-mRNA11002_1', 'premiRNA-mRNA11002', 'tRNA-aminoacid2436', 'circRNA-disease3302', 'miRNA-gobp56', 'siRNAd-disease2606', 'circRNA-protein2434', 'lncRNA-rRNA2434', 'miRNA-scRNA2434', 'mRNA-mRNA2434', 'others-gene2434', 'premiRNA-mRNA2434', 'pseudo-histoneModification2434', 'scaRNA-TF2434', 'snRNA-disease3302', 'tRNA-lncRNA2434', 'ncRNA-go2432', 'snoRNA-go1025', 'miRNA-go2327', 'RNAseP-go2327', 'variant-TF2566_4', 'miRNA-gene11013', 'tRNA-modification2434', 'lncRNA-disease3302', 'miRNA-gomf85', 'shRNA-mRNA2430', 'circRNA-premiRNA2434', 'lncRNA-ribozyme2434', 'miRNA-scaRNA2434', 'mRNA-histoneModification2434', 'ncRNA-TF2434', 'premiRNA-histoneModification2434', 'pseudogene-rRNA2434', 'scaRNA-subCellularLocalization1025', 'snoRNA-viralmiRNA2434', 'tRF-pseudogene2434', 'antisenseRNA-go2331', 'premiRNA-go1025', 'ncRNA-go1025', 'snRNA-goBFO50', 'variant-TF2566_3', 'miRNA-gene2450', 'tRF-cellLine1025', 'lncRNA-gene2434', 'premiRNA-gomf85', 'siRNA-mRNA2430', 'circRNA-miRNA2434', 'lncRNA-RBP2434', 'miRNA-ribozyme2434', 'mRNA-gene2434', 'ncRNA-subCellularLocalization1025', 'premiRNA-ev1018', 'pseudogene-pseudogene2434', 'scaRNA-RBP2434', 'snoRNA-TF2434', 'tRF-mRNA2434', 'lncRNA-go2432', 'rRNA-go1025', 'ribozyme-go2327', 'teloRNA-go2331', 'variant-TF2566_2', 'miRNA-gene11016', 'tRF-tRNA_MINTbase2202', 'snoRNA-lncRNA2434', 'premiRNA-TF2428', 'siRNAd-mRNA2430', 'ribozyme-gocc85', 'lncRNA-pseudogene2434', 'miRNA-pseudogene2434', 'mRNA-ev1018', 'ncRNA-RBP2434', 'piRNA-mRNA2434', 'pseudogene-protein2434', 'scaRNA-epiMod2434', 'snoRNA-subCellularLocalization1025', 'tRF-lncRNA2434', 'ncRNA-go2331', 'miRNA-go2264', 'scRNA-goBFO50', 'RNAseMRP-goBFO50', 'variant-TF2566_1', 'miRNA-gene2449', 'tRF-tRNA_tRFdb2202', 'snoRNA-scaRNA2434', 'premiRNA-TF2529', 'ASOd-protein10002', 'ribozyme-gomf1025', 'lncRNA-pDeath56', 'miRNA-protein2434', 'mRNA-disease3302', 'ncRNA-protein2434', 'piRNA-lncRNA2434', 'pseudogene-mRNA2434', 'rRNA-TF2434', 'snoRNA-RBP2434', 'TEC-chemical2434', 'antisenseRNA-go2327', 'piRNA-go2331', 'snRNA-go2331', 'miRNA-goBFO50', 'variant-disease2566', 'miRNA-gene11002', 'tsRNA-disease3302', 'snoRNA-pseudogene2434', 'premiRNA-TF2528', 'ASOd-protein11007', 'circRNA-gocc1018', 'lncRNA-ncRNA2434', 'miRNA-pDeath56', 'mRNA-chemical2434', 'ncRNA-histoneModification2434', 'PCG-lncRNA2434', 'pseudo-disease3302', 'rRNA-subCellularLocalization1025', 'snoRNA-protein2434', 'sRNA-TF2434', 'Y_RNA-subCellularLocalization1025', 'lncRNA-go2331', 'teloRNA-go2327', 'premiRNA-goBFO50', 'variant-gene2566', 'premiRNA-AtoI2434', 'miRNA-tsRNA2434', 'snoRNA-miscRNA2434', 'lncRNA-gobp56', 'ASOd-disease2606', 'viralRNA-ribozyme2526', 'lncRNA-lncRNA2434', 'miRNA-othersRNA2434', 'mRNA-cell1025', 'mtRNA-subCellularLocalization1025', 'other-viralmiRNA2434', 'pseudo-chemical2434', 'rRNA-rRNA2434', 'snoRNA-pDeath56', 'snRNA-viralmRNA2434', 'vtRNAs-protein2434', 'scRNA-go2331', 'miRNA-go2263', 'RNAseMRP-go2331', 'variant-premiRNA2566', 'premiRNA-premiRNAHOM0', 'premiRNA-lncRNA2434', 'snoRNA-retainedIntron2434', 'lncRNA-pw56', 'ASOd-mRNA2430', 'ribozyme-gobp56', 'lncRNA-histoneModification2434', 'miRNA-ncRNA2434', 'mRNA-anatomy1025', 'mRNA-viralnsRNA2434', 'others-TF2434', 'protein-viralmiRNA2434', 'rRNA-RBP2434', 'snoRNA-epiMod2434', 'snRNA-viralmiRNA2434', 'vRNA-subCellularLocalization1025', 'piRNA-go1025', 'snRNA-go2327', 'miRNA-go4035', 'variant-piRNA2566', 'variant-miRNA2566', 'premiRNA-miRNA2203', 'miRNA-lncRNA2434', 'snoRNA-tRNA2434', 'lncRNA-gocc1018', 'ASO-mRNA3002', 'riboswitch-gobp56', 'lncRNA-cell1025', 'miRNA-miRNA2434', 'miRNA-viralunRNA2434', 'mRNA-viralmiRNA2434', 'others-subCellularLocalization1025', 'protein-ev1018', 'ribozyme-TF2434', 'snoRNA-disease3302', 'snRNA-TF2434', 'unknown-viralmiRNA2434', 'lncRNA-go2327', 'premiRNA-go2331', 'teloRNA-go2326', 'piRNA-disease3302'])"
      ]
     },
     "execution_count": 12,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "master_edges = json.load(open('resources/Master_Edge_List_Dict.json', 'r'))\n",
    "master_edges.keys()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "id": "L7NsdEdQRYRd"
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Edge Type</th>\n",
       "      <th>Relation</th>\n",
       "      <th>Example Edge</th>\n",
       "      <th>Unique Edges</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>lncRNA-mRNA2434_</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>284749?lncRNA, 6900?mRNA</td>\n",
       "      <td>606435</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>miRNA-disease</td>\n",
       "      <td>causes or contributes to condition (RO_0003302)</td>\n",
       "      <td>MIMAT0000062, HP_0001402</td>\n",
       "      <td>122491</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>snoRNA-mRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100033418?snoRNA, 5300?mRNA</td>\n",
       "      <td>177</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>lncRNA-role</td>\n",
       "      <td>has biological role (RO_0002260)</td>\n",
       "      <td>100048912?lncRNA, Oncogene</td>\n",
       "      <td>173</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>gRNA-gene</td>\n",
       "      <td>decreases by repression quantity of (RO_0011007)</td>\n",
       "      <td>www.addgene.org/74705, 60</td>\n",
       "      <td>72</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>riboswitch-bactStrain</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>CD3578965, NCBITaxon_1496</td>\n",
       "      <td>214</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>lncRNA-anatomy</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100132354?lncRNA, UBERON_0000167</td>\n",
       "      <td>6</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>miRNA-ev</td>\n",
       "      <td>obsolete contained in (RO_0001018)</td>\n",
       "      <td>MIMAT0000062, GO_0070062</td>\n",
       "      <td>377</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>miRNA-viralProtein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000062, PR_000008466</td>\n",
       "      <td>59</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>mRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>10001?mRNA, PR_P35637</td>\n",
       "      <td>8629</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>othersRNA-rRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>4572?others, 4550?rRNA</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>protein-epiMod</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>PR_O00567, SO_0001353</td>\n",
       "      <td>33</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>ribozyme-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>85495?ribozyme, PR_P06748</td>\n",
       "      <td>13</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>snoRNA-chemical</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100033413?snoRNA, CHEBI_72564</td>\n",
       "      <td>15</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>snRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100147744?snRNA, GO_1990742</td>\n",
       "      <td>1739</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>unknown-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100128998?unknown, PR_O15350</td>\n",
       "      <td>74</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>scaRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>619383?scaRNA, GO_0006396</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>miRNA-go</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>MIMAT0000062, GO_0000792</td>\n",
       "      <td>1667</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>RNAseMRP-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>6023?RNAseMRP_RNA, GO_0000171</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>tRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>tRNA-Ala-AGC-1-1.html, GO_0006412</td>\n",
       "      <td>487</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>lncRNA-mRNA2434_</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>105370646?lncRNA, 11152?mRNA</td>\n",
       "      <td>606435</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>premiRNA-disease</td>\n",
       "      <td>causes or contributes to condition (RO_0003302)</td>\n",
       "      <td>MI0000060, GO_0006954</td>\n",
       "      <td>31281</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>snoRNA-rRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100033421?snoRNA, 18S?snoDBrRNA</td>\n",
       "      <td>672</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>lncRNA-biologicalContext</td>\n",
       "      <td>ubiquitously expressed in (RO_0002291)</td>\n",
       "      <td>643837?lncRNA, UBERON_0000479</td>\n",
       "      <td>6674</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>chemical-premiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>CHEBI_114785, MI0000650</td>\n",
       "      <td>199</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>riboswitch-protein</td>\n",
       "      <td>is downstream of sequence of (RO_0002529)</td>\n",
       "      <td>008OQCJM.html, PR_000007346</td>\n",
       "      <td>41890</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>lipid-ev</td>\n",
       "      <td>obsolete contained in (RO_0001018)</td>\n",
       "      <td>CHEBI_136143, GO_0070062</td>\n",
       "      <td>47</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>lncRNA-viralProtein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>378938?lncRNA, PR_P03126</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>miRNA-viralmRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000063, 951475?viral_mRNA</td>\n",
       "      <td>250</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>mRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100008586?mRNA, GO_0005840</td>\n",
       "      <td>50897</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>30</th>\n",
       "      <td>othersRNA-pseudogene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>106479140?others, 106480796?pseudo</td>\n",
       "      <td>8</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>31</th>\n",
       "      <td>premiRNA-viralmiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0000478, MIMAT0004480</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>32</th>\n",
       "      <td>ribozyme-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>85495?ribozyme, PR_O95707</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>33</th>\n",
       "      <td>scRNA-viralmiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>6029?scRNA, MIMAT0001581</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>34</th>\n",
       "      <td>snRNA-snRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100151683?snRNA, 100151684?snRNA</td>\n",
       "      <td>34</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>35</th>\n",
       "      <td>unknownRNA-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100128998?unknown, PR_P24928</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36</th>\n",
       "      <td>snoRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>100033422?snoRNA, GO_0006396</td>\n",
       "      <td>684</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>37</th>\n",
       "      <td>miRNA-go</td>\n",
       "      <td>is active in (RO_0002432)</td>\n",
       "      <td>MIMAT0002831, GO_0005575</td>\n",
       "      <td>21</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>38</th>\n",
       "      <td>ncRNA-goBFO</td>\n",
       "      <td>part of (BFO_0000050)</td>\n",
       "      <td>100151683?ncRNA, GO_0005690</td>\n",
       "      <td>42</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>39</th>\n",
       "      <td>RNAseP-goBFO</td>\n",
       "      <td>part of (BFO_0000050)</td>\n",
       "      <td>4878?RNAseP_RNA, GO_0030677</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>40</th>\n",
       "      <td>lncRNA-mRNA2434_</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100874195?lncRNA, 10099?mRNA</td>\n",
       "      <td>606435</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>41</th>\n",
       "      <td>premiRNA-epiMod</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0000300, H3ac</td>\n",
       "      <td>177</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>42</th>\n",
       "      <td>snoRNA-snRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100113382?snoRNA, 26835?snRNA</td>\n",
       "      <td>235</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>43</th>\n",
       "      <td>lncRNA-biologicalContext</td>\n",
       "      <td>under-expressed in (RO_0002246)</td>\n",
       "      <td>284661?lncRNA, UBERON_0000479</td>\n",
       "      <td>3140</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>44</th>\n",
       "      <td>chemical-miRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>CHEBI_114785, MIMAT0000064</td>\n",
       "      <td>5279</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45</th>\n",
       "      <td>mRNAv-disease</td>\n",
       "      <td>is substance that treats (RO_0002606)</td>\n",
       "      <td>DB04932, MONDO_0019514</td>\n",
       "      <td>6</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>46</th>\n",
       "      <td>lincRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100130967?lincRNA, GO_0005829</td>\n",
       "      <td>28</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>47</th>\n",
       "      <td>lncRNA-viralmRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100507463?lncRNA, 956531?viral_mRNA</td>\n",
       "      <td>8</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>48</th>\n",
       "      <td>miRNA-viralmiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000450, MIMAT0004480</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>49</th>\n",
       "      <td>mRNA-scaRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>10959?mRNA, 677767?scaRNA</td>\n",
       "      <td>4</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50</th>\n",
       "      <td>othersRNA-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100132403?ncRNA, PR_P24928</td>\n",
       "      <td>12</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>51</th>\n",
       "      <td>premiRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0000060, PR_O43474</td>\n",
       "      <td>71662</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>52</th>\n",
       "      <td>pseudo-viralmRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>359806?pseudo, 944566?viral_mRNA</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>53</th>\n",
       "      <td>scRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>109136578?scRNA, GO_0005737</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>54</th>\n",
       "      <td>snRNA-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100147744?snRNA, PR_O00425</td>\n",
       "      <td>158</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>55</th>\n",
       "      <td>unknown-histoneModification</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100128998?unknown, H2AFZ</td>\n",
       "      <td>18</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>56</th>\n",
       "      <td>lncRNA-go</td>\n",
       "      <td>acts upstream of (RO_0002263)</td>\n",
       "      <td>283131?lncRNA, GO_1901647</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>57</th>\n",
       "      <td>premiRNA-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>MI0000273, GO_0003730</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>58</th>\n",
       "      <td>ncRNA-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>100048912?ncRNA, GO_0005515</td>\n",
       "      <td>31</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>59</th>\n",
       "      <td>teloRNA-go</td>\n",
       "      <td>colocalizes with (RO_0002325)</td>\n",
       "      <td>7012?telomerase_RNA, GO_0000781</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>60</th>\n",
       "      <td>lncRNA-mRNA2434_</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100009676?lncRNA, 10001?mRNA</td>\n",
       "      <td>606435</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>61</th>\n",
       "      <td>miRNA-epiMod</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000422, H3K9me3</td>\n",
       "      <td>53</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>62</th>\n",
       "      <td>snoRNA-snoRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100033421?snoRNA, 100033448?snoRNA</td>\n",
       "      <td>746</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>63</th>\n",
       "      <td>lncRNA-biologicalContext</td>\n",
       "      <td>over-expressed in (RO_0002245)</td>\n",
       "      <td>148413?lncRNA, UBERON_0000479</td>\n",
       "      <td>1401</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>64</th>\n",
       "      <td>premiRNA-anatomy</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0000342, UBERON_0001155</td>\n",
       "      <td>69</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>65</th>\n",
       "      <td>aptamerd-disease</td>\n",
       "      <td>is substance that treats (RO_0002606)</td>\n",
       "      <td>DB04932, MONDO_0019514</td>\n",
       "      <td>6</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>66</th>\n",
       "      <td>eRNA-mRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>IL1beta-RBT46, 3553?mRNA</td>\n",
       "      <td>5</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>67</th>\n",
       "      <td>lncRNA-viralmiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100287569?lncRNA, MIMAT0001581</td>\n",
       "      <td>263</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>68</th>\n",
       "      <td>miRNA-unknownRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000094, 8026?unknown</td>\n",
       "      <td>14</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>69</th>\n",
       "      <td>mRNA-rRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100132916?mRNA, 4550?rRNA</td>\n",
       "      <td>133</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>70</th>\n",
       "      <td>othersRNA-mRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>106479219?others, 123036?mRNA</td>\n",
       "      <td>70</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>71</th>\n",
       "      <td>premiRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>MI0000060, GO_0005634</td>\n",
       "      <td>926</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>72</th>\n",
       "      <td>pseudo-viralmiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100131572?pseudo, MIMAT0001581</td>\n",
       "      <td>352</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>73</th>\n",
       "      <td>scRNA-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>618?scRNA, PR_O43251</td>\n",
       "      <td>5</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>74</th>\n",
       "      <td>snRNA-pseudogene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>101954269?snRNA, 26861?pseudo</td>\n",
       "      <td>15</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>75</th>\n",
       "      <td>tRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>4511?tRNA, PR_O75030</td>\n",
       "      <td>77</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>76</th>\n",
       "      <td>scaRNA-go</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>619383?scaRNA, GO_0005730</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>77</th>\n",
       "      <td>RNAseMRP-go</td>\n",
       "      <td>contributes to (RO_0002326)</td>\n",
       "      <td>6023?RNAseMRP_RNA, GO_0003968</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>78</th>\n",
       "      <td>tRNA-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>tRNA-Ala-AGC-1-1.html, GO_0030533</td>\n",
       "      <td>487</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>79</th>\n",
       "      <td>lncRNA-goBFO</td>\n",
       "      <td>part of (BFO_0000050)</td>\n",
       "      <td>100302692?lncRNA, GO_0005786</td>\n",
       "      <td>40</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>80</th>\n",
       "      <td>miRNA-mRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000062, 10001?mRNA</td>\n",
       "      <td>580000</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>81</th>\n",
       "      <td>premiRNA-epiModclass</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0000063, SO_0001274</td>\n",
       "      <td>596</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>82</th>\n",
       "      <td>snoRNA-premiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>26777?snoRNA, MI0000075</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>83</th>\n",
       "      <td>lncRNA-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100009613?lncRNA, PR_P24928</td>\n",
       "      <td>19035</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>84</th>\n",
       "      <td>premiRNA-premiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0022705, MI0026420</td>\n",
       "      <td>809</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>85</th>\n",
       "      <td>aptamerd-protein</td>\n",
       "      <td>molecularly interacts with (RO_0002436)</td>\n",
       "      <td>DB04932, PR_000001575</td>\n",
       "      <td>5</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>86</th>\n",
       "      <td>circRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100505549?circRNA, PR_P35637</td>\n",
       "      <td>33</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>87</th>\n",
       "      <td>lncRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100009613?lncRNA, PR_O43474</td>\n",
       "      <td>173842</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>88</th>\n",
       "      <td>miRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000062, PR_P01106</td>\n",
       "      <td>4038</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>89</th>\n",
       "      <td>mRNA-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>10000?mRNA, PR_P22626</td>\n",
       "      <td>17751</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>90</th>\n",
       "      <td>othersRNA-lncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100130386?others, 109729173?lncRNA</td>\n",
       "      <td>49</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>91</th>\n",
       "      <td>premiRNA-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0000084, PR_Q15007</td>\n",
       "      <td>37</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>92</th>\n",
       "      <td>pseudo-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100009667?pseudo, PR_P03372</td>\n",
       "      <td>188443</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>93</th>\n",
       "      <td>scRNA-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>618?scRNA, PR_O60506</td>\n",
       "      <td>5</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>94</th>\n",
       "      <td>snRNA-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100147744?snRNA, PR_Q969L4</td>\n",
       "      <td>11</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>95</th>\n",
       "      <td>tRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>4566?tRNA, GO_0005737</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>96</th>\n",
       "      <td>ncRNA-go</td>\n",
       "      <td>acts upstream of or within, negative effect (R...</td>\n",
       "      <td>283131?ncRNA, GO_0010793</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>97</th>\n",
       "      <td>snoRNA-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>26784?snoRNA, GO_0005515</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>98</th>\n",
       "      <td>miRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>MIMAT0000062, GO_0030512</td>\n",
       "      <td>2349</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>99</th>\n",
       "      <td>RNAseP-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>4878?RNAseP_RNA, GO_0008033</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>100</th>\n",
       "      <td>miRNA-mRNA11002_</td>\n",
       "      <td>regulates activity of (RO_0011002)</td>\n",
       "      <td>MIMAT0019742, 56977?mRNA</td>\n",
       "      <td>214754</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>101</th>\n",
       "      <td>miRNA-epiModclass</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000063, SO_0001373</td>\n",
       "      <td>1137</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>102</th>\n",
       "      <td>snoRNA-miRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100033413?snoRNA, MIMAT0000416</td>\n",
       "      <td>1400</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>103</th>\n",
       "      <td>smallProtein-lncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MSHSA414134, 643650?lncRNA</td>\n",
       "      <td>8283</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>104</th>\n",
       "      <td>miRNA-wikipathwayspw</td>\n",
       "      <td>participates in (RO_0000056)</td>\n",
       "      <td>MIMAT0026554, WP100</td>\n",
       "      <td>7354</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>105</th>\n",
       "      <td>aptamer-chemical</td>\n",
       "      <td>molecularly interacts with (RO_0002436)</td>\n",
       "      <td>aptamer-details/?id=112, CHEBI_17191</td>\n",
       "      <td>219</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>106</th>\n",
       "      <td>circRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>6774?circRNA, GO_0005737</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>107</th>\n",
       "      <td>lncRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100009676?lncRNA, GO_0005634</td>\n",
       "      <td>2313</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>108</th>\n",
       "      <td>miRNA-subCellularLocalization</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000062, GO_0005634</td>\n",
       "      <td>3492</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>109</th>\n",
       "      <td>mRNA-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>10011?mRNA, PR_Q96T58</td>\n",
       "      <td>228</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>110</th>\n",
       "      <td>others-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100129503?others, PR_P52272</td>\n",
       "      <td>65</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>111</th>\n",
       "      <td>premiRNA-pseudogene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0022712, 106480796?pseudo</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>112</th>\n",
       "      <td>pseudo-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100009667?pseudo, GO_0005634</td>\n",
       "      <td>230</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>113</th>\n",
       "      <td>scRNA-mRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>618?scRNA, 10261?mRNA</td>\n",
       "      <td>23</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>114</th>\n",
       "      <td>snRNA-mRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>101954273?snRNA, 140710?mRNA</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>115</th>\n",
       "      <td>tRNA-mRNA_NCBI</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>4567?tRNA, 4535?mRNA</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>116</th>\n",
       "      <td>lncRNA-go</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100129195?lncRNA, GO_0005730</td>\n",
       "      <td>34</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>117</th>\n",
       "      <td>premiRNA-go</td>\n",
       "      <td>acts upstream of (RO_0002263)</td>\n",
       "      <td>MI0000288, GO_0010629</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>118</th>\n",
       "      <td>teloRNA-go</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>7012?telomerase_RNA, GO_0005737</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>119</th>\n",
       "      <td>ncRNA-go</td>\n",
       "      <td>acts upstream of (RO_0002263)</td>\n",
       "      <td>283131?ncRNA, GO_1901647</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>120</th>\n",
       "      <td>miRNA-mRNA11002_</td>\n",
       "      <td>regulates activity of (RO_0011002)</td>\n",
       "      <td>MIMAT0004924, 11122?mRNA</td>\n",
       "      <td>214754</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>121</th>\n",
       "      <td>miRNA-pseudogene</td>\n",
       "      <td>regulates activity of (RO_0011002)</td>\n",
       "      <td>MIMAT0000062, 106480795?pseudo</td>\n",
       "      <td>59377</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>122</th>\n",
       "      <td>snoRNA-gene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100113378?snoRNA, 6628</td>\n",
       "      <td>367</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>123</th>\n",
       "      <td>lncRNA-chemical</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100009613?lncRNA, CHEBI_72564</td>\n",
       "      <td>1282</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>124</th>\n",
       "      <td>miRNA-reactome</td>\n",
       "      <td>participates in (RO_0000056)</td>\n",
       "      <td>MIMAT0000096, R-HSA-109581</td>\n",
       "      <td>10096</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>125</th>\n",
       "      <td>aptamer-protein</td>\n",
       "      <td>molecularly interacts with (RO_0002436)</td>\n",
       "      <td>aptamer-details/?id=104, PR_Q96JM3</td>\n",
       "      <td>117</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>126</th>\n",
       "      <td>circRNA-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100033425?circRNA, PR_Q15717</td>\n",
       "      <td>1105</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>127</th>\n",
       "      <td>lncRNA-scaRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100505648?lncRNA, 677780?scaRNA</td>\n",
       "      <td>11</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>128</th>\n",
       "      <td>miRNA-snRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000077, 26824?snRNA</td>\n",
       "      <td>19</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>129</th>\n",
       "      <td>mRNA-ncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>152137?mRNA, 106479257?ncRNA</td>\n",
       "      <td>7</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>130</th>\n",
       "      <td>others-histoneModification</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100129503?others, H2AFZ</td>\n",
       "      <td>263</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>131</th>\n",
       "      <td>premiRNA-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0000069, PR_P24864</td>\n",
       "      <td>27</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>132</th>\n",
       "      <td>pseudo-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100037280?pseudo, PR_P22087</td>\n",
       "      <td>1903</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>133</th>\n",
       "      <td>scRNA-disease</td>\n",
       "      <td>causes or contributes to condition (RO_0003302)</td>\n",
       "      <td>6029?scRNA, MONDO_0007254</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>134</th>\n",
       "      <td>snRNA-ev</td>\n",
       "      <td>obsolete contained in (RO_0001018)</td>\n",
       "      <td>26826?snRNA, GO_1990742</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>135</th>\n",
       "      <td>tRNA-mRNA_gtRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>CHR1.TRNA134-GLUTTC.html, 6132?mRNA</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>136</th>\n",
       "      <td>lncRNA-go</td>\n",
       "      <td>acts upstream of or within, negative effect (R...</td>\n",
       "      <td>283131?lncRNA, GO_0010793</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>137</th>\n",
       "      <td>RNAseMRP-go</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>6023?RNAseMRP_RNA, GO_0005739</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>138</th>\n",
       "      <td>rRNA-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>100008587?rRNA, GO_0003735</td>\n",
       "      <td>22</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>139</th>\n",
       "      <td>teloRNA-goBFO</td>\n",
       "      <td>part of (BFO_0000050)</td>\n",
       "      <td>7012?telomerase_RNA, GO_0000333</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>140</th>\n",
       "      <td>miRNA-mRNA11002_</td>\n",
       "      <td>regulates activity of (RO_0011002)</td>\n",
       "      <td>MIMAT0000062, 100037417?mRNA</td>\n",
       "      <td>214754</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>141</th>\n",
       "      <td>premiRNA-mRNA</td>\n",
       "      <td>regulates activity of (RO_0011002)</td>\n",
       "      <td>MI0000063, 1021?mRNA</td>\n",
       "      <td>116</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>142</th>\n",
       "      <td>tRNA-aminoacid</td>\n",
       "      <td>molecularly interacts with (RO_0002436)</td>\n",
       "      <td>tRNA-Leu-CAA-1-1.html, CHEBI_25017</td>\n",
       "      <td>549</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>143</th>\n",
       "      <td>circRNA-disease</td>\n",
       "      <td>causes or contributes to condition (RO_0003302)</td>\n",
       "      <td>10000?circRNA, HP_0006770</td>\n",
       "      <td>1061</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>144</th>\n",
       "      <td>miRNA-gobp</td>\n",
       "      <td>participates in (RO_0000056)</td>\n",
       "      <td>MIMAT0000271, GO_0036498</td>\n",
       "      <td>41349</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>145</th>\n",
       "      <td>siRNAd-disease</td>\n",
       "      <td>is substance that treats (RO_0002606)</td>\n",
       "      <td>DB14582, MONDO_0017132</td>\n",
       "      <td>6</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>146</th>\n",
       "      <td>circRNA-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100048912?circRNA, PR_O00541</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>147</th>\n",
       "      <td>lncRNA-rRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100287366?lncRNA, 4549?rRNA</td>\n",
       "      <td>18</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>148</th>\n",
       "      <td>miRNA-scRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000430, 618?scRNA</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>149</th>\n",
       "      <td>mRNA-mRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>10006?mRNA, 402117?mRNA</td>\n",
       "      <td>7035</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>150</th>\n",
       "      <td>others-gene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>7012?others, 6694</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>151</th>\n",
       "      <td>premiRNA-mRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0000060, 100529063?mRNA</td>\n",
       "      <td>223</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>152</th>\n",
       "      <td>pseudo-histoneModification</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100034743?pseudo, H3K27ac</td>\n",
       "      <td>460</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>153</th>\n",
       "      <td>scaRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>107397391?scaRNA, PR_O15350</td>\n",
       "      <td>429</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>154</th>\n",
       "      <td>snRNA-disease</td>\n",
       "      <td>causes or contributes to condition (RO_0003302)</td>\n",
       "      <td>124904613?snRNA, MONDO_0004975</td>\n",
       "      <td>15</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>155</th>\n",
       "      <td>tRNA-lncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>4511?tRNA, 647979?lncRNA</td>\n",
       "      <td>9</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>156</th>\n",
       "      <td>ncRNA-go</td>\n",
       "      <td>is active in (RO_0002432)</td>\n",
       "      <td>283131?ncRNA, GO_0042382</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>157</th>\n",
       "      <td>snoRNA-go</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100033422?snoRNA, GO_0005730</td>\n",
       "      <td>709</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>158</th>\n",
       "      <td>miRNA-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>MIMAT0000062, GO_1903231</td>\n",
       "      <td>535</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>159</th>\n",
       "      <td>RNAseP-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>4878?RNAseP_RNA, GO_0004526</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>160</th>\n",
       "      <td>variant-TF2566_</td>\n",
       "      <td>causally influences (RO_0002566)</td>\n",
       "      <td>rs2515847, PR_Q9H3D4</td>\n",
       "      <td>515845</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>161</th>\n",
       "      <td>miRNA-gene</td>\n",
       "      <td>indirectly positively regulates activity of (R...</td>\n",
       "      <td>MIMAT0000062, 86</td>\n",
       "      <td>92582</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>162</th>\n",
       "      <td>tRNA-modification</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>tRNA-Ala-AGC-11-1.html, m2G10</td>\n",
       "      <td>1366</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>163</th>\n",
       "      <td>lncRNA-disease</td>\n",
       "      <td>causes or contributes to condition (RO_0003302)</td>\n",
       "      <td>100009676?lncRNA, MONDO_0002656</td>\n",
       "      <td>29984</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>164</th>\n",
       "      <td>miRNA-gomf</td>\n",
       "      <td>has function (RO_0000085)</td>\n",
       "      <td>MIMAT0000454, GO_0004519</td>\n",
       "      <td>3400</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>165</th>\n",
       "      <td>shRNA-mRNA</td>\n",
       "      <td>involved in negative regulation of (RO_0002430)</td>\n",
       "      <td>1117.html, 1454?mRNA</td>\n",
       "      <td>40</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>166</th>\n",
       "      <td>circRNA-premiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>10000?circRNA, MI0000490</td>\n",
       "      <td>125504</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>167</th>\n",
       "      <td>lncRNA-ribozyme</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>109729173?lncRNA, 85495?ribozyme</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>168</th>\n",
       "      <td>miRNA-scaRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000073, 677778?scaRNA</td>\n",
       "      <td>10</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>169</th>\n",
       "      <td>mRNA-histoneModification</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100133204?mRNA, H2AFZ</td>\n",
       "      <td>486</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>170</th>\n",
       "      <td>ncRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100130418?ncRNA, PR_O75030</td>\n",
       "      <td>716</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>171</th>\n",
       "      <td>premiRNA-histoneModification</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0000060, H2AFZ</td>\n",
       "      <td>20754</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>172</th>\n",
       "      <td>pseudogene-rRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100873311?pseudo, 100169761?rRNA</td>\n",
       "      <td>5</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>173</th>\n",
       "      <td>scaRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>677768?scaRNA, GO_0005634</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>174</th>\n",
       "      <td>snoRNA-viralmiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100033414?snoRNA, MIMAT0001581</td>\n",
       "      <td>8</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>175</th>\n",
       "      <td>tRF-pseudogene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>trfdb?1005, 9906?pseudo</td>\n",
       "      <td>26</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>176</th>\n",
       "      <td>antisenseRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>100048912?antisense_RNA, GO_0031507</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>177</th>\n",
       "      <td>premiRNA-go</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>MI0006383, GO_0005730</td>\n",
       "      <td>8</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>178</th>\n",
       "      <td>ncRNA-go</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100129195?ncRNA, GO_0005730</td>\n",
       "      <td>34</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>179</th>\n",
       "      <td>snRNA-goBFO</td>\n",
       "      <td>part of (BFO_0000050)</td>\n",
       "      <td>101447996?snRNA, GO_0005685</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>180</th>\n",
       "      <td>variant-TF2566_</td>\n",
       "      <td>causally influences (RO_0002566)</td>\n",
       "      <td>rs1428747, PR_P56693</td>\n",
       "      <td>515844</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>181</th>\n",
       "      <td>miRNA-gene</td>\n",
       "      <td>directly positively regulates activity of (RO_...</td>\n",
       "      <td>MIMAT0000062, 12</td>\n",
       "      <td>349315</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>182</th>\n",
       "      <td>tRF-cellLine</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>trfdb?1001, CLO_0001088</td>\n",
       "      <td>905</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>183</th>\n",
       "      <td>lncRNA-gene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100048912?lncRNA, 142</td>\n",
       "      <td>1051</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>184</th>\n",
       "      <td>premiRNA-gomf</td>\n",
       "      <td>has function (RO_0000085)</td>\n",
       "      <td>MI0000105, GO_0007155</td>\n",
       "      <td>1716</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>185</th>\n",
       "      <td>siRNA-mRNA</td>\n",
       "      <td>involved in negative regulation of (RO_0002430)</td>\n",
       "      <td>1103.html, 8125?mRNA</td>\n",
       "      <td>77</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>186</th>\n",
       "      <td>circRNA-miRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>10000?circRNA, MIMAT0000269</td>\n",
       "      <td>321108</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>187</th>\n",
       "      <td>lncRNA-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100009676?lncRNA, PR_O00425</td>\n",
       "      <td>6087</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>188</th>\n",
       "      <td>miRNA-ribozyme</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000421, 85495?ribozyme</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>189</th>\n",
       "      <td>mRNA-gene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>10011?mRNA, 283120</td>\n",
       "      <td>11</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>190</th>\n",
       "      <td>ncRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100048912?ncRNA, GO_0005634</td>\n",
       "      <td>107</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>191</th>\n",
       "      <td>premiRNA-ev</td>\n",
       "      <td>obsolete contained in (RO_0001018)</td>\n",
       "      <td>MI0000063, GO_0070062</td>\n",
       "      <td>25</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>192</th>\n",
       "      <td>pseudogene-pseudogene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100009667?pseudo, 100009667?pseudo</td>\n",
       "      <td>86</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>193</th>\n",
       "      <td>scaRNA-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>677679?scaRNA, PR_Q9Y6M1</td>\n",
       "      <td>35</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>194</th>\n",
       "      <td>snoRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100033413?snoRNA, PR_P03372</td>\n",
       "      <td>11932</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>195</th>\n",
       "      <td>tRF-mRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>trfdb?1001, 10263?mRNA</td>\n",
       "      <td>26315</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>196</th>\n",
       "      <td>lncRNA-go</td>\n",
       "      <td>is active in (RO_0002432)</td>\n",
       "      <td>283131?lncRNA, GO_0042382</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>197</th>\n",
       "      <td>rRNA-go</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100008587?rRNA, GO_0005840</td>\n",
       "      <td>22</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>198</th>\n",
       "      <td>ribozyme-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>family/RF02275, GO_0003824</td>\n",
       "      <td>4</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>199</th>\n",
       "      <td>teloRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>7012?telomerase_RNA, GO_0007004</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>200</th>\n",
       "      <td>variant-TF2566_</td>\n",
       "      <td>causally influences (RO_0002566)</td>\n",
       "      <td>rs111947526, PR_O14978</td>\n",
       "      <td>515845</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>201</th>\n",
       "      <td>miRNA-gene</td>\n",
       "      <td>indirectly negatively regulates activity of (R...</td>\n",
       "      <td>MIMAT0000062, 86</td>\n",
       "      <td>150774</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>202</th>\n",
       "      <td>tRF-tRNA_MINTbase</td>\n",
       "      <td>develops from (RO_0002202)</td>\n",
       "      <td>tRF-30-PNR8YP9LON4V, tRNA-Gly-CCC-1-1.html</td>\n",
       "      <td>113819</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>203</th>\n",
       "      <td>snoRNA-lncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100033414?snoRNA, 60674?lncRNA</td>\n",
       "      <td>141</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>204</th>\n",
       "      <td>premiRNA-TF</td>\n",
       "      <td>involved in regulation of (RO_0002428)</td>\n",
       "      <td>MI0000060, PR_O75030</td>\n",
       "      <td>1851</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>205</th>\n",
       "      <td>siRNAd-mRNA</td>\n",
       "      <td>involved in negative regulation of (RO_0002430)</td>\n",
       "      <td>DB14582, 7276?mRNA</td>\n",
       "      <td>4</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>206</th>\n",
       "      <td>ribozyme-gocc</td>\n",
       "      <td>has function (RO_0000085)</td>\n",
       "      <td>family/RF00011, GO_0030680</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>207</th>\n",
       "      <td>lncRNA-pseudogene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100038246?lncRNA, 100421137?pseudo</td>\n",
       "      <td>2577</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>208</th>\n",
       "      <td>miRNA-pseudogene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000062, 100128011?pseudo</td>\n",
       "      <td>1894</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>209</th>\n",
       "      <td>mRNA-ev</td>\n",
       "      <td>obsolete contained in (RO_0001018)</td>\n",
       "      <td>100008586?mRNA, GO_1990742</td>\n",
       "      <td>14116</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>210</th>\n",
       "      <td>ncRNA-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100130418?ncRNA, PR_Q92804</td>\n",
       "      <td>47</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>211</th>\n",
       "      <td>piRNA-mRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>piR-hsa-39980, 6241?mRNA</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>212</th>\n",
       "      <td>pseudogene-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100034743?pseudo, PR_P24928</td>\n",
       "      <td>54</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>213</th>\n",
       "      <td>scaRNA-epiMod</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100158262?scaRNA, SO_0001327</td>\n",
       "      <td>21</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>214</th>\n",
       "      <td>snoRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100033413?snoRNA, GO_1990742</td>\n",
       "      <td>763</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>215</th>\n",
       "      <td>tRF-lncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>trfdb?3008a, 11147?lncRNA</td>\n",
       "      <td>18</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>216</th>\n",
       "      <td>ncRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>100048912?ncRNA, GO_0031507</td>\n",
       "      <td>109</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>217</th>\n",
       "      <td>miRNA-go</td>\n",
       "      <td>acts upstream of or within (RO_0002264)</td>\n",
       "      <td>MIMAT0000066, GO_0070104</td>\n",
       "      <td>45</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>218</th>\n",
       "      <td>scRNA-goBFO</td>\n",
       "      <td>part of (BFO_0000050)</td>\n",
       "      <td>378706?scRNA, GO_0005786</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>219</th>\n",
       "      <td>RNAseMRP-goBFO</td>\n",
       "      <td>part of (BFO_0000050)</td>\n",
       "      <td>6023?RNAseMRP_RNA, GO_0000172</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>220</th>\n",
       "      <td>variant-TF2566_</td>\n",
       "      <td>causally influences (RO_0002566)</td>\n",
       "      <td>rs11991390, PR_Q99856</td>\n",
       "      <td>515845</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>221</th>\n",
       "      <td>miRNA-gene</td>\n",
       "      <td>directly negatively regulates activity of (RO_...</td>\n",
       "      <td>MIMAT0000062, 12</td>\n",
       "      <td>350000</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>222</th>\n",
       "      <td>tRF-tRNA_tRFdb</td>\n",
       "      <td>develops from (RO_0002202)</td>\n",
       "      <td>trfdb?1001, tRNA-Ser-TGA-1-1.html</td>\n",
       "      <td>985</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>223</th>\n",
       "      <td>snoRNA-scaRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>677817?snoRNA, 677776?scaRNA</td>\n",
       "      <td>36</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>224</th>\n",
       "      <td>premiRNA-TF</td>\n",
       "      <td>is downstream of sequence of (RO_0002529)</td>\n",
       "      <td>MI0000060, PR_O00470</td>\n",
       "      <td>1752</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>225</th>\n",
       "      <td>ASOd-protein</td>\n",
       "      <td>is carrier of (RO_0010002)</td>\n",
       "      <td>DB16699, PR_P02768</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>226</th>\n",
       "      <td>ribozyme-gomf</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>family/RF00011, GO_0004526</td>\n",
       "      <td>5</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>227</th>\n",
       "      <td>lncRNA-pDeath</td>\n",
       "      <td>participates in (RO_0000056)</td>\n",
       "      <td>1000?lncRNA, GO_0006915</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>228</th>\n",
       "      <td>miRNA-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000444, PR_P26358</td>\n",
       "      <td>105</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>229</th>\n",
       "      <td>mRNA-disease</td>\n",
       "      <td>causes or contributes to condition (RO_0003302)</td>\n",
       "      <td>1000?mRNA, MONDO_0007256</td>\n",
       "      <td>513</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>230</th>\n",
       "      <td>ncRNA-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100132403?ncRNA, PR_P24928</td>\n",
       "      <td>12</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>231</th>\n",
       "      <td>piRNA-lncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>piR-hsa-20280, 407975?lncRNA</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>232</th>\n",
       "      <td>pseudogene-mRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100009667?pseudo, 5460?mRNA</td>\n",
       "      <td>1173</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>233</th>\n",
       "      <td>rRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100169751?rRNA, PR_O43474</td>\n",
       "      <td>713</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>234</th>\n",
       "      <td>snoRNA-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100033413?snoRNA, PR_Q9Y6M1</td>\n",
       "      <td>751</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>235</th>\n",
       "      <td>TEC-chemical</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>23766?TEC, CHEBI_72564</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>236</th>\n",
       "      <td>antisenseRNA-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>100048912?antisense_RNA, GO_0005515</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>237</th>\n",
       "      <td>piRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>piR-hsa-43176, GO_0006396</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>238</th>\n",
       "      <td>snRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>101447996?snRNA, GO_0000395</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>239</th>\n",
       "      <td>miRNA-goBFO</td>\n",
       "      <td>part of (BFO_0000050)</td>\n",
       "      <td>MIMAT0000089, GO_0016442</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>240</th>\n",
       "      <td>variant-disease</td>\n",
       "      <td>causally influences (RO_0002566)</td>\n",
       "      <td>rs10046, HP_0003002</td>\n",
       "      <td>1407</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>241</th>\n",
       "      <td>miRNA-gene</td>\n",
       "      <td>regulates activity of (RO_0011002)</td>\n",
       "      <td>MIMAT0000062, 52</td>\n",
       "      <td>496707</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>242</th>\n",
       "      <td>tsRNA-disease</td>\n",
       "      <td>causes or contributes to condition (RO_0003302)</td>\n",
       "      <td>tsRNA-Ala-1-0001, MONDO_0000553</td>\n",
       "      <td>26602</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>243</th>\n",
       "      <td>snoRNA-pseudogene</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100036565?snoRNA, 100420364?pseudo</td>\n",
       "      <td>9</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>244</th>\n",
       "      <td>premiRNA-TF</td>\n",
       "      <td>is upstream of sequence of (RO_0002528)</td>\n",
       "      <td>MI0000060, PR_O43763</td>\n",
       "      <td>1633</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>245</th>\n",
       "      <td>ASOd-protein</td>\n",
       "      <td>decreases by repression quantity of (RO_0011007)</td>\n",
       "      <td>DB05487, PR_000007204</td>\n",
       "      <td>11</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>246</th>\n",
       "      <td>circRNA-gocc</td>\n",
       "      <td>overlaps sequence of (RO_0002526)</td>\n",
       "      <td>129642?circRNA, GO_0072562</td>\n",
       "      <td>6</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>247</th>\n",
       "      <td>lncRNA-ncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100506305?lncRNA, 100133121?ncRNA</td>\n",
       "      <td>7</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>248</th>\n",
       "      <td>miRNA-pDeath</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000062, GO_0006914</td>\n",
       "      <td>792</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>249</th>\n",
       "      <td>mRNA-chemical</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100505576?mRNA, CHEBI_72564</td>\n",
       "      <td>97</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>250</th>\n",
       "      <td>ncRNA-histoneModification</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100132403?ncRNA, H3K27ac</td>\n",
       "      <td>130</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>251</th>\n",
       "      <td>PCG-lncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>27250, 282997?lncRNA</td>\n",
       "      <td>12</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>252</th>\n",
       "      <td>pseudo-disease</td>\n",
       "      <td>causes or contributes to condition (RO_0003302)</td>\n",
       "      <td>100033407?pseudo, MONDO_0005036</td>\n",
       "      <td>405</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>253</th>\n",
       "      <td>rRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>4549?rRNA, GO_0005739</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>254</th>\n",
       "      <td>snoRNA-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100113382?snoRNA, PR_P04075</td>\n",
       "      <td>4</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>255</th>\n",
       "      <td>sRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>109136578?sRNA, PR_O15350</td>\n",
       "      <td>74</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>256</th>\n",
       "      <td>Y_RNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>6084?Y_RNA, GO_1990742</td>\n",
       "      <td>4</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>257</th>\n",
       "      <td>lncRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>100048912?lncRNA, GO_0031507</td>\n",
       "      <td>105</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>258</th>\n",
       "      <td>teloRNA-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>7012?telomerase_RNA, GO_0000332</td>\n",
       "      <td>6</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>259</th>\n",
       "      <td>premiRNA-goBFO</td>\n",
       "      <td>part of (BFO_0000050)</td>\n",
       "      <td>MI0000060, GO_0016442</td>\n",
       "      <td>383</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>260</th>\n",
       "      <td>variant-gene</td>\n",
       "      <td>causally influences (RO_0002566)</td>\n",
       "      <td>rs71571091, 148753</td>\n",
       "      <td>357873</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>261</th>\n",
       "      <td>premiRNA-AtoI</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0000776, GO_0006382</td>\n",
       "      <td>4</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>262</th>\n",
       "      <td>miRNA-tsRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0016916, tsRNA-Leu-i-0438</td>\n",
       "      <td>135518</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>263</th>\n",
       "      <td>snoRNA-miscRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>767561?snoRNA, 6029?misc_RNA</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>264</th>\n",
       "      <td>lncRNA-gobp</td>\n",
       "      <td>participates in (RO_0000056)</td>\n",
       "      <td>100128893?lncRNA, GO_0030154</td>\n",
       "      <td>32</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>265</th>\n",
       "      <td>ASOd-disease</td>\n",
       "      <td>is substance that treats (RO_0002606)</td>\n",
       "      <td>DB05528, MONDO_0018328</td>\n",
       "      <td>14</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>266</th>\n",
       "      <td>viralRNA-ribozyme</td>\n",
       "      <td>overlaps sequence of (RO_0002526)</td>\n",
       "      <td>NC_040729.1, family/RF02682</td>\n",
       "      <td>5896</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>267</th>\n",
       "      <td>lncRNA-lncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100009676?lncRNA, 109729173?lncRNA</td>\n",
       "      <td>3187</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>268</th>\n",
       "      <td>miRNA-othersRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000243, 106479431?others</td>\n",
       "      <td>14</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>269</th>\n",
       "      <td>mRNA-cell</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>10011?mRNA, CLO_0003684</td>\n",
       "      <td>75</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>270</th>\n",
       "      <td>mtRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>4512?mtRNA, GO_0005634</td>\n",
       "      <td>19</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>271</th>\n",
       "      <td>other-viralmiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>339476?others, MIMAT0001581</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>272</th>\n",
       "      <td>pseudo-chemical</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100129291?pseudo, CHEBI_72564</td>\n",
       "      <td>85</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>273</th>\n",
       "      <td>rRNA-rRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>109910381?rRNA, 4549?rRNA</td>\n",
       "      <td>4</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>274</th>\n",
       "      <td>snoRNA-pDeath</td>\n",
       "      <td>participates in (RO_0000056)</td>\n",
       "      <td>1050?snoRNA, GO_0006915</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>275</th>\n",
       "      <td>snRNA-viralmRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>6066?snRNA, 43740578?viral_mRNA</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>276</th>\n",
       "      <td>vtRNAs-protein</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>56664?vtRNAs, PR_P23246</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>277</th>\n",
       "      <td>scRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>378706?scRNA, GO_0006617</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>278</th>\n",
       "      <td>miRNA-go</td>\n",
       "      <td>acts upstream of (RO_0002263)</td>\n",
       "      <td>MIMAT0000062, GO_0090051</td>\n",
       "      <td>423</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>279</th>\n",
       "      <td>RNAseMRP-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>6023?RNAseMRP_RNA, GO_0001172</td>\n",
       "      <td>4</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>280</th>\n",
       "      <td>variant-premiRNA</td>\n",
       "      <td>causally influences (RO_0002566)</td>\n",
       "      <td>rs1000378392, MI0017867</td>\n",
       "      <td>11200</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>281</th>\n",
       "      <td>premiRNA-premiRNA</td>\n",
       "      <td>in similarity relationship with (RO_HOM0000000)</td>\n",
       "      <td>MI0000080, MI0000231</td>\n",
       "      <td>136</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>282</th>\n",
       "      <td>premiRNA-lncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MI0000060, 283120?lncRNA</td>\n",
       "      <td>3649</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>283</th>\n",
       "      <td>snoRNA-retainedIntron</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100113393?snoRNA, 441951?retained_intron</td>\n",
       "      <td>31</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>284</th>\n",
       "      <td>lncRNA-pw</td>\n",
       "      <td>participates in (RO_0000056)</td>\n",
       "      <td>100124700?lncRNA, PW_0000007</td>\n",
       "      <td>58</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>285</th>\n",
       "      <td>ASOd-mRNA</td>\n",
       "      <td>involved in negative regulation of (RO_0002430)</td>\n",
       "      <td>DB05528, 338?mRNA</td>\n",
       "      <td>7</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>286</th>\n",
       "      <td>ribozyme-gobp</td>\n",
       "      <td>participates in (RO_0000056)</td>\n",
       "      <td>family/RF00011, GO_0008033</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>287</th>\n",
       "      <td>lncRNA-histoneModification</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100009613?lncRNA, H3K27ac</td>\n",
       "      <td>51375</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>288</th>\n",
       "      <td>miRNA-ncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000103, 100533955?ncRNA</td>\n",
       "      <td>14</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>289</th>\n",
       "      <td>mRNA-anatomy</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>3458?mRNA, CL_0000558</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>290</th>\n",
       "      <td>mRNA-viralnsRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>6047?mRNA, 3'-mivaRNAII-138?viral_nsRNA</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>291</th>\n",
       "      <td>others-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100126299?others, PR_O43474</td>\n",
       "      <td>11851</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>292</th>\n",
       "      <td>protein-viralmiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>PR_O43251, MIMAT0015217</td>\n",
       "      <td>21</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>293</th>\n",
       "      <td>rRNA-RBP</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100169751?rRNA, PR_Q86U44</td>\n",
       "      <td>30</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>294</th>\n",
       "      <td>snoRNA-epiMod</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>319103?snoRNA, SO_0001298</td>\n",
       "      <td>6</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>295</th>\n",
       "      <td>snRNA-viralmiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>125050?snRNA, MIMAT0001581</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>296</th>\n",
       "      <td>vRNA-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>56662?vRNA, GO_0005634</td>\n",
       "      <td>6</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>297</th>\n",
       "      <td>piRNA-go</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>piR-hsa-43176, GO_0005730</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>298</th>\n",
       "      <td>snRNA-go</td>\n",
       "      <td>causally downstream of or within (RO_0002427)</td>\n",
       "      <td>101447996?snRNA, GO_0030627</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>299</th>\n",
       "      <td>miRNA-go</td>\n",
       "      <td>acts upstream of, negative effect (RO_0004035)</td>\n",
       "      <td>MIMAT0000083, GO_0051607</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>300</th>\n",
       "      <td>variant-piRNA</td>\n",
       "      <td>causally influences (RO_0002566)</td>\n",
       "      <td>rs10001106, piR-hsa-146385</td>\n",
       "      <td>12838</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>301</th>\n",
       "      <td>variant-miRNA</td>\n",
       "      <td>causally influences (RO_0002566)</td>\n",
       "      <td>rs10106, MIMAT0004952</td>\n",
       "      <td>101</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>302</th>\n",
       "      <td>premiRNA-miRNA</td>\n",
       "      <td>develops into (RO_0002203)</td>\n",
       "      <td>MI0000060, MIMAT0000062</td>\n",
       "      <td>2879</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>303</th>\n",
       "      <td>miRNA-lncRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000062, 100048912?lncRNA</td>\n",
       "      <td>14855</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>304</th>\n",
       "      <td>snoRNA-tRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>6082?snoRNA, TRNA-PRO-CCG</td>\n",
       "      <td>7</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>305</th>\n",
       "      <td>lncRNA-gocc</td>\n",
       "      <td>obsolete contained in (RO_0001018)</td>\n",
       "      <td>10001?lncRNA, GO_0005634</td>\n",
       "      <td>26682</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>306</th>\n",
       "      <td>ASO-mRNA</td>\n",
       "      <td>represses expression of (RO_0003002)</td>\n",
       "      <td>119X/E20X+2, 6323?mRNA</td>\n",
       "      <td>2678</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>307</th>\n",
       "      <td>riboswitch-gobp</td>\n",
       "      <td>participates in (RO_0000056)</td>\n",
       "      <td>XIK9D1LR.html, GO_0006428</td>\n",
       "      <td>13072</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>308</th>\n",
       "      <td>lncRNA-cell</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>100128285?lncRNA, CLO_0001601</td>\n",
       "      <td>52</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>309</th>\n",
       "      <td>miRNA-miRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000065, MIMAT0000441</td>\n",
       "      <td>4</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>310</th>\n",
       "      <td>miRNA-viralunRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>MIMAT0000434, 3'NTR(NC_003899.1)?viral_unassig...</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>311</th>\n",
       "      <td>mRNA-viralmiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>10000?mRNA, MIMAT0001581</td>\n",
       "      <td>17923</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>312</th>\n",
       "      <td>others-subCellularLocalization</td>\n",
       "      <td>located in (RO_0001025)</td>\n",
       "      <td>28738?others, GO_0005829</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>313</th>\n",
       "      <td>protein-ev</td>\n",
       "      <td>obsolete contained in (RO_0001018)</td>\n",
       "      <td>PR_000050224, GO_0070062</td>\n",
       "      <td>20070</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>314</th>\n",
       "      <td>ribozyme-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>106481202?ribozyme, PR_O43474</td>\n",
       "      <td>94</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>315</th>\n",
       "      <td>snoRNA-disease</td>\n",
       "      <td>causes or contributes to condition (RO_0003302)</td>\n",
       "      <td>100033806?snoRNA, MONDO_0000820</td>\n",
       "      <td>21</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>316</th>\n",
       "      <td>snRNA-TF</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>100147744?snRNA, PR_O15350</td>\n",
       "      <td>24489</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>317</th>\n",
       "      <td>unknown-viralmiRNA</td>\n",
       "      <td>interacts with (RO_0002434)</td>\n",
       "      <td>55199?unknown, MIMAT0001581</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>318</th>\n",
       "      <td>lncRNA-go</td>\n",
       "      <td>enables (RO_0002327)</td>\n",
       "      <td>100048912?lncRNA, GO_0005515</td>\n",
       "      <td>27</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>319</th>\n",
       "      <td>premiRNA-go</td>\n",
       "      <td>involved in (RO_0002331)</td>\n",
       "      <td>MI0000060, GO_0035195</td>\n",
       "      <td>563</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>320</th>\n",
       "      <td>teloRNA-go</td>\n",
       "      <td>contributes to (RO_0002326)</td>\n",
       "      <td>7012?telomerase_RNA, GO_0003720</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>321</th>\n",
       "      <td>piRNA-disease</td>\n",
       "      <td>causes or contributes to condition (RO_0003302)</td>\n",
       "      <td>piR-hsa-10123, MONDO_0004986</td>\n",
       "      <td>275</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                            Edge Type  \\\n",
       "0                    lncRNA-mRNA2434_   \n",
       "1                       miRNA-disease   \n",
       "2                         snoRNA-mRNA   \n",
       "3                         lncRNA-role   \n",
       "4                           gRNA-gene   \n",
       "5               riboswitch-bactStrain   \n",
       "6                      lncRNA-anatomy   \n",
       "7                            miRNA-ev   \n",
       "8                  miRNA-viralProtein   \n",
       "9                             mRNA-TF   \n",
       "10                     othersRNA-rRNA   \n",
       "11                     protein-epiMod   \n",
       "12                       ribozyme-RBP   \n",
       "13                    snoRNA-chemical   \n",
       "14      snRNA-subCellularLocalization   \n",
       "15                         unknown-TF   \n",
       "16                          scaRNA-go   \n",
       "17                           miRNA-go   \n",
       "18                        RNAseMRP-go   \n",
       "19                            tRNA-go   \n",
       "20                   lncRNA-mRNA2434_   \n",
       "21                   premiRNA-disease   \n",
       "22                        snoRNA-rRNA   \n",
       "23           lncRNA-biologicalContext   \n",
       "24                  chemical-premiRNA   \n",
       "25                 riboswitch-protein   \n",
       "26                           lipid-ev   \n",
       "27                lncRNA-viralProtein   \n",
       "28                    miRNA-viralmRNA   \n",
       "29       mRNA-subCellularLocalization   \n",
       "30               othersRNA-pseudogene   \n",
       "31                premiRNA-viralmiRNA   \n",
       "32                   ribozyme-protein   \n",
       "33                   scRNA-viralmiRNA   \n",
       "34                        snRNA-snRNA   \n",
       "35                 unknownRNA-protein   \n",
       "36                          snoRNA-go   \n",
       "37                           miRNA-go   \n",
       "38                        ncRNA-goBFO   \n",
       "39                       RNAseP-goBFO   \n",
       "40                   lncRNA-mRNA2434_   \n",
       "41                    premiRNA-epiMod   \n",
       "42                       snoRNA-snRNA   \n",
       "43           lncRNA-biologicalContext   \n",
       "44                     chemical-miRNA   \n",
       "45                      mRNAv-disease   \n",
       "46    lincRNA-subCellularLocalization   \n",
       "47                   lncRNA-viralmRNA   \n",
       "48                   miRNA-viralmiRNA   \n",
       "49                        mRNA-scaRNA   \n",
       "50                  othersRNA-protein   \n",
       "51                        premiRNA-TF   \n",
       "52                   pseudo-viralmRNA   \n",
       "53      scRNA-subCellularLocalization   \n",
       "54                          snRNA-RBP   \n",
       "55        unknown-histoneModification   \n",
       "56                          lncRNA-go   \n",
       "57                        premiRNA-go   \n",
       "58                           ncRNA-go   \n",
       "59                         teloRNA-go   \n",
       "60                   lncRNA-mRNA2434_   \n",
       "61                       miRNA-epiMod   \n",
       "62                      snoRNA-snoRNA   \n",
       "63           lncRNA-biologicalContext   \n",
       "64                   premiRNA-anatomy   \n",
       "65                   aptamerd-disease   \n",
       "66                          eRNA-mRNA   \n",
       "67                  lncRNA-viralmiRNA   \n",
       "68                   miRNA-unknownRNA   \n",
       "69                          mRNA-rRNA   \n",
       "70                     othersRNA-mRNA   \n",
       "71   premiRNA-subCellularLocalization   \n",
       "72                  pseudo-viralmiRNA   \n",
       "73                          scRNA-RBP   \n",
       "74                   snRNA-pseudogene   \n",
       "75                            tRNA-TF   \n",
       "76                          scaRNA-go   \n",
       "77                        RNAseMRP-go   \n",
       "78                            tRNA-go   \n",
       "79                       lncRNA-goBFO   \n",
       "80                         miRNA-mRNA   \n",
       "81               premiRNA-epiModclass   \n",
       "82                    snoRNA-premiRNA   \n",
       "83                     lncRNA-protein   \n",
       "84                  premiRNA-premiRNA   \n",
       "85                   aptamerd-protein   \n",
       "86                         circRNA-TF   \n",
       "87                          lncRNA-TF   \n",
       "88                           miRNA-TF   \n",
       "89                           mRNA-RBP   \n",
       "90                   othersRNA-lncRNA   \n",
       "91                       premiRNA-RBP   \n",
       "92                          pseudo-TF   \n",
       "93                      scRNA-protein   \n",
       "94                      snRNA-protein   \n",
       "95       tRNA-subCellularLocalization   \n",
       "96                           ncRNA-go   \n",
       "97                          snoRNA-go   \n",
       "98                           miRNA-go   \n",
       "99                          RNAseP-go   \n",
       "100                  miRNA-mRNA11002_   \n",
       "101                 miRNA-epiModclass   \n",
       "102                      snoRNA-miRNA   \n",
       "103               smallProtein-lncRNA   \n",
       "104              miRNA-wikipathwayspw   \n",
       "105                  aptamer-chemical   \n",
       "106   circRNA-subCellularLocalization   \n",
       "107    lncRNA-subCellularLocalization   \n",
       "108     miRNA-subCellularLocalization   \n",
       "109                      mRNA-protein   \n",
       "110                        others-RBP   \n",
       "111               premiRNA-pseudogene   \n",
       "112    pseudo-subCellularLocalization   \n",
       "113                        scRNA-mRNA   \n",
       "114                        snRNA-mRNA   \n",
       "115                    tRNA-mRNA_NCBI   \n",
       "116                         lncRNA-go   \n",
       "117                       premiRNA-go   \n",
       "118                        teloRNA-go   \n",
       "119                          ncRNA-go   \n",
       "120                  miRNA-mRNA11002_   \n",
       "121                  miRNA-pseudogene   \n",
       "122                       snoRNA-gene   \n",
       "123                   lncRNA-chemical   \n",
       "124                    miRNA-reactome   \n",
       "125                   aptamer-protein   \n",
       "126                       circRNA-RBP   \n",
       "127                     lncRNA-scaRNA   \n",
       "128                       miRNA-snRNA   \n",
       "129                        mRNA-ncRNA   \n",
       "130        others-histoneModification   \n",
       "131                  premiRNA-protein   \n",
       "132                        pseudo-RBP   \n",
       "133                     scRNA-disease   \n",
       "134                          snRNA-ev   \n",
       "135                   tRNA-mRNA_gtRNA   \n",
       "136                         lncRNA-go   \n",
       "137                       RNAseMRP-go   \n",
       "138                           rRNA-go   \n",
       "139                     teloRNA-goBFO   \n",
       "140                  miRNA-mRNA11002_   \n",
       "141                     premiRNA-mRNA   \n",
       "142                    tRNA-aminoacid   \n",
       "143                   circRNA-disease   \n",
       "144                        miRNA-gobp   \n",
       "145                    siRNAd-disease   \n",
       "146                   circRNA-protein   \n",
       "147                       lncRNA-rRNA   \n",
       "148                       miRNA-scRNA   \n",
       "149                         mRNA-mRNA   \n",
       "150                       others-gene   \n",
       "151                     premiRNA-mRNA   \n",
       "152        pseudo-histoneModification   \n",
       "153                         scaRNA-TF   \n",
       "154                     snRNA-disease   \n",
       "155                       tRNA-lncRNA   \n",
       "156                          ncRNA-go   \n",
       "157                         snoRNA-go   \n",
       "158                          miRNA-go   \n",
       "159                         RNAseP-go   \n",
       "160                   variant-TF2566_   \n",
       "161                        miRNA-gene   \n",
       "162                 tRNA-modification   \n",
       "163                    lncRNA-disease   \n",
       "164                        miRNA-gomf   \n",
       "165                        shRNA-mRNA   \n",
       "166                  circRNA-premiRNA   \n",
       "167                   lncRNA-ribozyme   \n",
       "168                      miRNA-scaRNA   \n",
       "169          mRNA-histoneModification   \n",
       "170                          ncRNA-TF   \n",
       "171      premiRNA-histoneModification   \n",
       "172                   pseudogene-rRNA   \n",
       "173    scaRNA-subCellularLocalization   \n",
       "174                 snoRNA-viralmiRNA   \n",
       "175                    tRF-pseudogene   \n",
       "176                   antisenseRNA-go   \n",
       "177                       premiRNA-go   \n",
       "178                          ncRNA-go   \n",
       "179                       snRNA-goBFO   \n",
       "180                   variant-TF2566_   \n",
       "181                        miRNA-gene   \n",
       "182                      tRF-cellLine   \n",
       "183                       lncRNA-gene   \n",
       "184                     premiRNA-gomf   \n",
       "185                        siRNA-mRNA   \n",
       "186                     circRNA-miRNA   \n",
       "187                        lncRNA-RBP   \n",
       "188                    miRNA-ribozyme   \n",
       "189                         mRNA-gene   \n",
       "190     ncRNA-subCellularLocalization   \n",
       "191                       premiRNA-ev   \n",
       "192             pseudogene-pseudogene   \n",
       "193                        scaRNA-RBP   \n",
       "194                         snoRNA-TF   \n",
       "195                          tRF-mRNA   \n",
       "196                         lncRNA-go   \n",
       "197                           rRNA-go   \n",
       "198                       ribozyme-go   \n",
       "199                        teloRNA-go   \n",
       "200                   variant-TF2566_   \n",
       "201                        miRNA-gene   \n",
       "202                 tRF-tRNA_MINTbase   \n",
       "203                     snoRNA-lncRNA   \n",
       "204                       premiRNA-TF   \n",
       "205                       siRNAd-mRNA   \n",
       "206                     ribozyme-gocc   \n",
       "207                 lncRNA-pseudogene   \n",
       "208                  miRNA-pseudogene   \n",
       "209                           mRNA-ev   \n",
       "210                         ncRNA-RBP   \n",
       "211                        piRNA-mRNA   \n",
       "212                pseudogene-protein   \n",
       "213                     scaRNA-epiMod   \n",
       "214    snoRNA-subCellularLocalization   \n",
       "215                        tRF-lncRNA   \n",
       "216                          ncRNA-go   \n",
       "217                          miRNA-go   \n",
       "218                       scRNA-goBFO   \n",
       "219                    RNAseMRP-goBFO   \n",
       "220                   variant-TF2566_   \n",
       "221                        miRNA-gene   \n",
       "222                    tRF-tRNA_tRFdb   \n",
       "223                     snoRNA-scaRNA   \n",
       "224                       premiRNA-TF   \n",
       "225                      ASOd-protein   \n",
       "226                     ribozyme-gomf   \n",
       "227                     lncRNA-pDeath   \n",
       "228                     miRNA-protein   \n",
       "229                      mRNA-disease   \n",
       "230                     ncRNA-protein   \n",
       "231                      piRNA-lncRNA   \n",
       "232                   pseudogene-mRNA   \n",
       "233                           rRNA-TF   \n",
       "234                        snoRNA-RBP   \n",
       "235                      TEC-chemical   \n",
       "236                   antisenseRNA-go   \n",
       "237                          piRNA-go   \n",
       "238                          snRNA-go   \n",
       "239                       miRNA-goBFO   \n",
       "240                   variant-disease   \n",
       "241                        miRNA-gene   \n",
       "242                     tsRNA-disease   \n",
       "243                 snoRNA-pseudogene   \n",
       "244                       premiRNA-TF   \n",
       "245                      ASOd-protein   \n",
       "246                      circRNA-gocc   \n",
       "247                      lncRNA-ncRNA   \n",
       "248                      miRNA-pDeath   \n",
       "249                     mRNA-chemical   \n",
       "250         ncRNA-histoneModification   \n",
       "251                        PCG-lncRNA   \n",
       "252                    pseudo-disease   \n",
       "253      rRNA-subCellularLocalization   \n",
       "254                    snoRNA-protein   \n",
       "255                           sRNA-TF   \n",
       "256     Y_RNA-subCellularLocalization   \n",
       "257                         lncRNA-go   \n",
       "258                        teloRNA-go   \n",
       "259                    premiRNA-goBFO   \n",
       "260                      variant-gene   \n",
       "261                     premiRNA-AtoI   \n",
       "262                       miRNA-tsRNA   \n",
       "263                    snoRNA-miscRNA   \n",
       "264                       lncRNA-gobp   \n",
       "265                      ASOd-disease   \n",
       "266                 viralRNA-ribozyme   \n",
       "267                     lncRNA-lncRNA   \n",
       "268                   miRNA-othersRNA   \n",
       "269                         mRNA-cell   \n",
       "270     mtRNA-subCellularLocalization   \n",
       "271                  other-viralmiRNA   \n",
       "272                   pseudo-chemical   \n",
       "273                         rRNA-rRNA   \n",
       "274                     snoRNA-pDeath   \n",
       "275                   snRNA-viralmRNA   \n",
       "276                    vtRNAs-protein   \n",
       "277                          scRNA-go   \n",
       "278                          miRNA-go   \n",
       "279                       RNAseMRP-go   \n",
       "280                  variant-premiRNA   \n",
       "281                 premiRNA-premiRNA   \n",
       "282                   premiRNA-lncRNA   \n",
       "283             snoRNA-retainedIntron   \n",
       "284                         lncRNA-pw   \n",
       "285                         ASOd-mRNA   \n",
       "286                     ribozyme-gobp   \n",
       "287        lncRNA-histoneModification   \n",
       "288                       miRNA-ncRNA   \n",
       "289                      mRNA-anatomy   \n",
       "290                   mRNA-viralnsRNA   \n",
       "291                         others-TF   \n",
       "292                protein-viralmiRNA   \n",
       "293                          rRNA-RBP   \n",
       "294                     snoRNA-epiMod   \n",
       "295                  snRNA-viralmiRNA   \n",
       "296      vRNA-subCellularLocalization   \n",
       "297                          piRNA-go   \n",
       "298                          snRNA-go   \n",
       "299                          miRNA-go   \n",
       "300                     variant-piRNA   \n",
       "301                     variant-miRNA   \n",
       "302                    premiRNA-miRNA   \n",
       "303                      miRNA-lncRNA   \n",
       "304                       snoRNA-tRNA   \n",
       "305                       lncRNA-gocc   \n",
       "306                          ASO-mRNA   \n",
       "307                   riboswitch-gobp   \n",
       "308                       lncRNA-cell   \n",
       "309                       miRNA-miRNA   \n",
       "310                  miRNA-viralunRNA   \n",
       "311                   mRNA-viralmiRNA   \n",
       "312    others-subCellularLocalization   \n",
       "313                        protein-ev   \n",
       "314                       ribozyme-TF   \n",
       "315                    snoRNA-disease   \n",
       "316                          snRNA-TF   \n",
       "317                unknown-viralmiRNA   \n",
       "318                         lncRNA-go   \n",
       "319                       premiRNA-go   \n",
       "320                        teloRNA-go   \n",
       "321                     piRNA-disease   \n",
       "\n",
       "                                              Relation  \\\n",
       "0                          interacts with (RO_0002434)   \n",
       "1      causes or contributes to condition (RO_0003302)   \n",
       "2                          interacts with (RO_0002434)   \n",
       "3                     has biological role (RO_0002260)   \n",
       "4     decreases by repression quantity of (RO_0011007)   \n",
       "5                          interacts with (RO_0002434)   \n",
       "6                              located in (RO_0001025)   \n",
       "7                   obsolete contained in (RO_0001018)   \n",
       "8                          interacts with (RO_0002434)   \n",
       "9                          interacts with (RO_0002434)   \n",
       "10                         interacts with (RO_0002434)   \n",
       "11                         interacts with (RO_0002434)   \n",
       "12                         interacts with (RO_0002434)   \n",
       "13                         interacts with (RO_0002434)   \n",
       "14                             located in (RO_0001025)   \n",
       "15                         interacts with (RO_0002434)   \n",
       "16                            involved in (RO_0002331)   \n",
       "17                             located in (RO_0001025)   \n",
       "18                                enables (RO_0002327)   \n",
       "19                            involved in (RO_0002331)   \n",
       "20                         interacts with (RO_0002434)   \n",
       "21     causes or contributes to condition (RO_0003302)   \n",
       "22                         interacts with (RO_0002434)   \n",
       "23              ubiquitously expressed in (RO_0002291)   \n",
       "24                         interacts with (RO_0002434)   \n",
       "25           is downstream of sequence of (RO_0002529)   \n",
       "26                  obsolete contained in (RO_0001018)   \n",
       "27                         interacts with (RO_0002434)   \n",
       "28                         interacts with (RO_0002434)   \n",
       "29                             located in (RO_0001025)   \n",
       "30                         interacts with (RO_0002434)   \n",
       "31                         interacts with (RO_0002434)   \n",
       "32                         interacts with (RO_0002434)   \n",
       "33                         interacts with (RO_0002434)   \n",
       "34                         interacts with (RO_0002434)   \n",
       "35                         interacts with (RO_0002434)   \n",
       "36                            involved in (RO_0002331)   \n",
       "37                           is active in (RO_0002432)   \n",
       "38                               part of (BFO_0000050)   \n",
       "39                               part of (BFO_0000050)   \n",
       "40                         interacts with (RO_0002434)   \n",
       "41                         interacts with (RO_0002434)   \n",
       "42                         interacts with (RO_0002434)   \n",
       "43                     under-expressed in (RO_0002246)   \n",
       "44                         interacts with (RO_0002434)   \n",
       "45               is substance that treats (RO_0002606)   \n",
       "46                             located in (RO_0001025)   \n",
       "47                         interacts with (RO_0002434)   \n",
       "48                         interacts with (RO_0002434)   \n",
       "49                         interacts with (RO_0002434)   \n",
       "50                         interacts with (RO_0002434)   \n",
       "51                         interacts with (RO_0002434)   \n",
       "52                         interacts with (RO_0002434)   \n",
       "53                             located in (RO_0001025)   \n",
       "54                         interacts with (RO_0002434)   \n",
       "55                         interacts with (RO_0002434)   \n",
       "56                       acts upstream of (RO_0002263)   \n",
       "57                                enables (RO_0002327)   \n",
       "58                                enables (RO_0002327)   \n",
       "59                       colocalizes with (RO_0002325)   \n",
       "60                         interacts with (RO_0002434)   \n",
       "61                         interacts with (RO_0002434)   \n",
       "62                         interacts with (RO_0002434)   \n",
       "63                      over-expressed in (RO_0002245)   \n",
       "64                         interacts with (RO_0002434)   \n",
       "65               is substance that treats (RO_0002606)   \n",
       "66                         interacts with (RO_0002434)   \n",
       "67                         interacts with (RO_0002434)   \n",
       "68                         interacts with (RO_0002434)   \n",
       "69                         interacts with (RO_0002434)   \n",
       "70                         interacts with (RO_0002434)   \n",
       "71                             located in (RO_0001025)   \n",
       "72                         interacts with (RO_0002434)   \n",
       "73                         interacts with (RO_0002434)   \n",
       "74                         interacts with (RO_0002434)   \n",
       "75                         interacts with (RO_0002434)   \n",
       "76                             located in (RO_0001025)   \n",
       "77                         contributes to (RO_0002326)   \n",
       "78                                enables (RO_0002327)   \n",
       "79                               part of (BFO_0000050)   \n",
       "80                         interacts with (RO_0002434)   \n",
       "81                         interacts with (RO_0002434)   \n",
       "82                         interacts with (RO_0002434)   \n",
       "83                         interacts with (RO_0002434)   \n",
       "84                         interacts with (RO_0002434)   \n",
       "85             molecularly interacts with (RO_0002436)   \n",
       "86                         interacts with (RO_0002434)   \n",
       "87                         interacts with (RO_0002434)   \n",
       "88                         interacts with (RO_0002434)   \n",
       "89                         interacts with (RO_0002434)   \n",
       "90                         interacts with (RO_0002434)   \n",
       "91                         interacts with (RO_0002434)   \n",
       "92                         interacts with (RO_0002434)   \n",
       "93                         interacts with (RO_0002434)   \n",
       "94                         interacts with (RO_0002434)   \n",
       "95                             located in (RO_0001025)   \n",
       "96   acts upstream of or within, negative effect (R...   \n",
       "97                                enables (RO_0002327)   \n",
       "98                            involved in (RO_0002331)   \n",
       "99                            involved in (RO_0002331)   \n",
       "100                 regulates activity of (RO_0011002)   \n",
       "101                        interacts with (RO_0002434)   \n",
       "102                        interacts with (RO_0002434)   \n",
       "103                        interacts with (RO_0002434)   \n",
       "104                       participates in (RO_0000056)   \n",
       "105            molecularly interacts with (RO_0002436)   \n",
       "106                            located in (RO_0001025)   \n",
       "107                            located in (RO_0001025)   \n",
       "108                        interacts with (RO_0002434)   \n",
       "109                        interacts with (RO_0002434)   \n",
       "110                        interacts with (RO_0002434)   \n",
       "111                        interacts with (RO_0002434)   \n",
       "112                            located in (RO_0001025)   \n",
       "113                        interacts with (RO_0002434)   \n",
       "114                        interacts with (RO_0002434)   \n",
       "115                        interacts with (RO_0002434)   \n",
       "116                            located in (RO_0001025)   \n",
       "117                      acts upstream of (RO_0002263)   \n",
       "118                            located in (RO_0001025)   \n",
       "119                      acts upstream of (RO_0002263)   \n",
       "120                 regulates activity of (RO_0011002)   \n",
       "121                 regulates activity of (RO_0011002)   \n",
       "122                        interacts with (RO_0002434)   \n",
       "123                        interacts with (RO_0002434)   \n",
       "124                       participates in (RO_0000056)   \n",
       "125            molecularly interacts with (RO_0002436)   \n",
       "126                        interacts with (RO_0002434)   \n",
       "127                        interacts with (RO_0002434)   \n",
       "128                        interacts with (RO_0002434)   \n",
       "129                        interacts with (RO_0002434)   \n",
       "130                        interacts with (RO_0002434)   \n",
       "131                        interacts with (RO_0002434)   \n",
       "132                        interacts with (RO_0002434)   \n",
       "133    causes or contributes to condition (RO_0003302)   \n",
       "134                 obsolete contained in (RO_0001018)   \n",
       "135                        interacts with (RO_0002434)   \n",
       "136  acts upstream of or within, negative effect (R...   \n",
       "137                            located in (RO_0001025)   \n",
       "138                               enables (RO_0002327)   \n",
       "139                              part of (BFO_0000050)   \n",
       "140                 regulates activity of (RO_0011002)   \n",
       "141                 regulates activity of (RO_0011002)   \n",
       "142            molecularly interacts with (RO_0002436)   \n",
       "143    causes or contributes to condition (RO_0003302)   \n",
       "144                       participates in (RO_0000056)   \n",
       "145              is substance that treats (RO_0002606)   \n",
       "146                        interacts with (RO_0002434)   \n",
       "147                        interacts with (RO_0002434)   \n",
       "148                        interacts with (RO_0002434)   \n",
       "149                        interacts with (RO_0002434)   \n",
       "150                        interacts with (RO_0002434)   \n",
       "151                        interacts with (RO_0002434)   \n",
       "152                        interacts with (RO_0002434)   \n",
       "153                        interacts with (RO_0002434)   \n",
       "154    causes or contributes to condition (RO_0003302)   \n",
       "155                        interacts with (RO_0002434)   \n",
       "156                          is active in (RO_0002432)   \n",
       "157                            located in (RO_0001025)   \n",
       "158                               enables (RO_0002327)   \n",
       "159                               enables (RO_0002327)   \n",
       "160                   causally influences (RO_0002566)   \n",
       "161  indirectly positively regulates activity of (R...   \n",
       "162                        interacts with (RO_0002434)   \n",
       "163    causes or contributes to condition (RO_0003302)   \n",
       "164                          has function (RO_0000085)   \n",
       "165    involved in negative regulation of (RO_0002430)   \n",
       "166                        interacts with (RO_0002434)   \n",
       "167                        interacts with (RO_0002434)   \n",
       "168                        interacts with (RO_0002434)   \n",
       "169                        interacts with (RO_0002434)   \n",
       "170                        interacts with (RO_0002434)   \n",
       "171                        interacts with (RO_0002434)   \n",
       "172                        interacts with (RO_0002434)   \n",
       "173                            located in (RO_0001025)   \n",
       "174                        interacts with (RO_0002434)   \n",
       "175                        interacts with (RO_0002434)   \n",
       "176                           involved in (RO_0002331)   \n",
       "177                            located in (RO_0001025)   \n",
       "178                            located in (RO_0001025)   \n",
       "179                              part of (BFO_0000050)   \n",
       "180                   causally influences (RO_0002566)   \n",
       "181  directly positively regulates activity of (RO_...   \n",
       "182                            located in (RO_0001025)   \n",
       "183                        interacts with (RO_0002434)   \n",
       "184                          has function (RO_0000085)   \n",
       "185    involved in negative regulation of (RO_0002430)   \n",
       "186                        interacts with (RO_0002434)   \n",
       "187                        interacts with (RO_0002434)   \n",
       "188                        interacts with (RO_0002434)   \n",
       "189                        interacts with (RO_0002434)   \n",
       "190                            located in (RO_0001025)   \n",
       "191                 obsolete contained in (RO_0001018)   \n",
       "192                        interacts with (RO_0002434)   \n",
       "193                        interacts with (RO_0002434)   \n",
       "194                        interacts with (RO_0002434)   \n",
       "195                        interacts with (RO_0002434)   \n",
       "196                          is active in (RO_0002432)   \n",
       "197                            located in (RO_0001025)   \n",
       "198                               enables (RO_0002327)   \n",
       "199                           involved in (RO_0002331)   \n",
       "200                   causally influences (RO_0002566)   \n",
       "201  indirectly negatively regulates activity of (R...   \n",
       "202                         develops from (RO_0002202)   \n",
       "203                        interacts with (RO_0002434)   \n",
       "204             involved in regulation of (RO_0002428)   \n",
       "205    involved in negative regulation of (RO_0002430)   \n",
       "206                          has function (RO_0000085)   \n",
       "207                        interacts with (RO_0002434)   \n",
       "208                        interacts with (RO_0002434)   \n",
       "209                 obsolete contained in (RO_0001018)   \n",
       "210                        interacts with (RO_0002434)   \n",
       "211                        interacts with (RO_0002434)   \n",
       "212                        interacts with (RO_0002434)   \n",
       "213                        interacts with (RO_0002434)   \n",
       "214                            located in (RO_0001025)   \n",
       "215                        interacts with (RO_0002434)   \n",
       "216                           involved in (RO_0002331)   \n",
       "217            acts upstream of or within (RO_0002264)   \n",
       "218                              part of (BFO_0000050)   \n",
       "219                              part of (BFO_0000050)   \n",
       "220                   causally influences (RO_0002566)   \n",
       "221  directly negatively regulates activity of (RO_...   \n",
       "222                         develops from (RO_0002202)   \n",
       "223                        interacts with (RO_0002434)   \n",
       "224          is downstream of sequence of (RO_0002529)   \n",
       "225                         is carrier of (RO_0010002)   \n",
       "226                            located in (RO_0001025)   \n",
       "227                       participates in (RO_0000056)   \n",
       "228                        interacts with (RO_0002434)   \n",
       "229    causes or contributes to condition (RO_0003302)   \n",
       "230                        interacts with (RO_0002434)   \n",
       "231                        interacts with (RO_0002434)   \n",
       "232                        interacts with (RO_0002434)   \n",
       "233                        interacts with (RO_0002434)   \n",
       "234                        interacts with (RO_0002434)   \n",
       "235                        interacts with (RO_0002434)   \n",
       "236                               enables (RO_0002327)   \n",
       "237                           involved in (RO_0002331)   \n",
       "238                           involved in (RO_0002331)   \n",
       "239                              part of (BFO_0000050)   \n",
       "240                   causally influences (RO_0002566)   \n",
       "241                 regulates activity of (RO_0011002)   \n",
       "242    causes or contributes to condition (RO_0003302)   \n",
       "243                        interacts with (RO_0002434)   \n",
       "244            is upstream of sequence of (RO_0002528)   \n",
       "245   decreases by repression quantity of (RO_0011007)   \n",
       "246                  overlaps sequence of (RO_0002526)   \n",
       "247                        interacts with (RO_0002434)   \n",
       "248                        interacts with (RO_0002434)   \n",
       "249                        interacts with (RO_0002434)   \n",
       "250                        interacts with (RO_0002434)   \n",
       "251                        interacts with (RO_0002434)   \n",
       "252    causes or contributes to condition (RO_0003302)   \n",
       "253                            located in (RO_0001025)   \n",
       "254                        interacts with (RO_0002434)   \n",
       "255                        interacts with (RO_0002434)   \n",
       "256                            located in (RO_0001025)   \n",
       "257                           involved in (RO_0002331)   \n",
       "258                               enables (RO_0002327)   \n",
       "259                              part of (BFO_0000050)   \n",
       "260                   causally influences (RO_0002566)   \n",
       "261                        interacts with (RO_0002434)   \n",
       "262                        interacts with (RO_0002434)   \n",
       "263                        interacts with (RO_0002434)   \n",
       "264                       participates in (RO_0000056)   \n",
       "265              is substance that treats (RO_0002606)   \n",
       "266                  overlaps sequence of (RO_0002526)   \n",
       "267                        interacts with (RO_0002434)   \n",
       "268                        interacts with (RO_0002434)   \n",
       "269                            located in (RO_0001025)   \n",
       "270                            located in (RO_0001025)   \n",
       "271                        interacts with (RO_0002434)   \n",
       "272                        interacts with (RO_0002434)   \n",
       "273                        interacts with (RO_0002434)   \n",
       "274                       participates in (RO_0000056)   \n",
       "275                        interacts with (RO_0002434)   \n",
       "276                        interacts with (RO_0002434)   \n",
       "277                           involved in (RO_0002331)   \n",
       "278                      acts upstream of (RO_0002263)   \n",
       "279                           involved in (RO_0002331)   \n",
       "280                   causally influences (RO_0002566)   \n",
       "281    in similarity relationship with (RO_HOM0000000)   \n",
       "282                        interacts with (RO_0002434)   \n",
       "283                        interacts with (RO_0002434)   \n",
       "284                       participates in (RO_0000056)   \n",
       "285    involved in negative regulation of (RO_0002430)   \n",
       "286                       participates in (RO_0000056)   \n",
       "287                        interacts with (RO_0002434)   \n",
       "288                        interacts with (RO_0002434)   \n",
       "289                            located in (RO_0001025)   \n",
       "290                        interacts with (RO_0002434)   \n",
       "291                        interacts with (RO_0002434)   \n",
       "292                        interacts with (RO_0002434)   \n",
       "293                        interacts with (RO_0002434)   \n",
       "294                        interacts with (RO_0002434)   \n",
       "295                        interacts with (RO_0002434)   \n",
       "296                            located in (RO_0001025)   \n",
       "297                            located in (RO_0001025)   \n",
       "298      causally downstream of or within (RO_0002427)   \n",
       "299     acts upstream of, negative effect (RO_0004035)   \n",
       "300                   causally influences (RO_0002566)   \n",
       "301                   causally influences (RO_0002566)   \n",
       "302                         develops into (RO_0002203)   \n",
       "303                        interacts with (RO_0002434)   \n",
       "304                        interacts with (RO_0002434)   \n",
       "305                 obsolete contained in (RO_0001018)   \n",
       "306               represses expression of (RO_0003002)   \n",
       "307                       participates in (RO_0000056)   \n",
       "308                            located in (RO_0001025)   \n",
       "309                        interacts with (RO_0002434)   \n",
       "310                        interacts with (RO_0002434)   \n",
       "311                        interacts with (RO_0002434)   \n",
       "312                            located in (RO_0001025)   \n",
       "313                 obsolete contained in (RO_0001018)   \n",
       "314                        interacts with (RO_0002434)   \n",
       "315    causes or contributes to condition (RO_0003302)   \n",
       "316                        interacts with (RO_0002434)   \n",
       "317                        interacts with (RO_0002434)   \n",
       "318                               enables (RO_0002327)   \n",
       "319                           involved in (RO_0002331)   \n",
       "320                        contributes to (RO_0002326)   \n",
       "321    causes or contributes to condition (RO_0003302)   \n",
       "\n",
       "                                          Example Edge  Unique Edges  \n",
       "0                             284749?lncRNA, 6900?mRNA        606435  \n",
       "1                             MIMAT0000062, HP_0001402        122491  \n",
       "2                          100033418?snoRNA, 5300?mRNA           177  \n",
       "3                           100048912?lncRNA, Oncogene           173  \n",
       "4                            www.addgene.org/74705, 60            72  \n",
       "5                            CD3578965, NCBITaxon_1496           214  \n",
       "6                     100132354?lncRNA, UBERON_0000167             6  \n",
       "7                             MIMAT0000062, GO_0070062           377  \n",
       "8                           MIMAT0000062, PR_000008466            59  \n",
       "9                                10001?mRNA, PR_P35637          8629  \n",
       "10                              4572?others, 4550?rRNA             1  \n",
       "11                               PR_O00567, SO_0001353            33  \n",
       "12                           85495?ribozyme, PR_P06748            13  \n",
       "13                       100033413?snoRNA, CHEBI_72564            15  \n",
       "14                         100147744?snRNA, GO_1990742          1739  \n",
       "15                        100128998?unknown, PR_O15350            74  \n",
       "16                           619383?scaRNA, GO_0006396             1  \n",
       "17                            MIMAT0000062, GO_0000792          1667  \n",
       "18                       6023?RNAseMRP_RNA, GO_0000171             2  \n",
       "19                   tRNA-Ala-AGC-1-1.html, GO_0006412           487  \n",
       "20                        105370646?lncRNA, 11152?mRNA        606435  \n",
       "21                               MI0000060, GO_0006954         31281  \n",
       "22                     100033421?snoRNA, 18S?snoDBrRNA           672  \n",
       "23                       643837?lncRNA, UBERON_0000479          6674  \n",
       "24                             CHEBI_114785, MI0000650           199  \n",
       "25                         008OQCJM.html, PR_000007346         41890  \n",
       "26                            CHEBI_136143, GO_0070062            47  \n",
       "27                            378938?lncRNA, PR_P03126             1  \n",
       "28                     MIMAT0000063, 951475?viral_mRNA           250  \n",
       "29                          100008586?mRNA, GO_0005840         50897  \n",
       "30                  106479140?others, 106480796?pseudo             8  \n",
       "31                             MI0000478, MIMAT0004480             1  \n",
       "32                           85495?ribozyme, PR_O95707             2  \n",
       "33                            6029?scRNA, MIMAT0001581             1  \n",
       "34                    100151683?snRNA, 100151684?snRNA            34  \n",
       "35                        100128998?unknown, PR_P24928             1  \n",
       "36                        100033422?snoRNA, GO_0006396           684  \n",
       "37                            MIMAT0002831, GO_0005575            21  \n",
       "38                         100151683?ncRNA, GO_0005690            42  \n",
       "39                         4878?RNAseP_RNA, GO_0030677             1  \n",
       "40                        100874195?lncRNA, 10099?mRNA        606435  \n",
       "41                                     MI0000300, H3ac           177  \n",
       "42                       100113382?snoRNA, 26835?snRNA           235  \n",
       "43                       284661?lncRNA, UBERON_0000479          3140  \n",
       "44                          CHEBI_114785, MIMAT0000064          5279  \n",
       "45                              DB04932, MONDO_0019514             6  \n",
       "46                       100130967?lincRNA, GO_0005829            28  \n",
       "47                 100507463?lncRNA, 956531?viral_mRNA             8  \n",
       "48                          MIMAT0000450, MIMAT0004480             1  \n",
       "49                           10959?mRNA, 677767?scaRNA             4  \n",
       "50                          100132403?ncRNA, PR_P24928            12  \n",
       "51                                MI0000060, PR_O43474         71662  \n",
       "52                    359806?pseudo, 944566?viral_mRNA             3  \n",
       "53                         109136578?scRNA, GO_0005737             2  \n",
       "54                          100147744?snRNA, PR_O00425           158  \n",
       "55                            100128998?unknown, H2AFZ            18  \n",
       "56                           283131?lncRNA, GO_1901647             1  \n",
       "57                               MI0000273, GO_0003730             3  \n",
       "58                         100048912?ncRNA, GO_0005515            31  \n",
       "59                     7012?telomerase_RNA, GO_0000781             1  \n",
       "60                        100009676?lncRNA, 10001?mRNA        606435  \n",
       "61                               MIMAT0000422, H3K9me3            53  \n",
       "62                  100033421?snoRNA, 100033448?snoRNA           746  \n",
       "63                       148413?lncRNA, UBERON_0000479          1401  \n",
       "64                           MI0000342, UBERON_0001155            69  \n",
       "65                              DB04932, MONDO_0019514             6  \n",
       "66                            IL1beta-RBT46, 3553?mRNA             5  \n",
       "67                      100287569?lncRNA, MIMAT0001581           263  \n",
       "68                          MIMAT0000094, 8026?unknown            14  \n",
       "69                           100132916?mRNA, 4550?rRNA           133  \n",
       "70                       106479219?others, 123036?mRNA            70  \n",
       "71                               MI0000060, GO_0005634           926  \n",
       "72                      100131572?pseudo, MIMAT0001581           352  \n",
       "73                                618?scRNA, PR_O43251             5  \n",
       "74                       101954269?snRNA, 26861?pseudo            15  \n",
       "75                                4511?tRNA, PR_O75030            77  \n",
       "76                           619383?scaRNA, GO_0005730             1  \n",
       "77                       6023?RNAseMRP_RNA, GO_0003968             2  \n",
       "78                   tRNA-Ala-AGC-1-1.html, GO_0030533           487  \n",
       "79                        100302692?lncRNA, GO_0005786            40  \n",
       "80                            MIMAT0000062, 10001?mRNA        580000  \n",
       "81                               MI0000063, SO_0001274           596  \n",
       "82                             26777?snoRNA, MI0000075             1  \n",
       "83                         100009613?lncRNA, PR_P24928         19035  \n",
       "84                                MI0022705, MI0026420           809  \n",
       "85                               DB04932, PR_000001575             5  \n",
       "86                        100505549?circRNA, PR_P35637            33  \n",
       "87                         100009613?lncRNA, PR_O43474        173842  \n",
       "88                             MIMAT0000062, PR_P01106          4038  \n",
       "89                               10000?mRNA, PR_P22626         17751  \n",
       "90                  100130386?others, 109729173?lncRNA            49  \n",
       "91                                MI0000084, PR_Q15007            37  \n",
       "92                         100009667?pseudo, PR_P03372        188443  \n",
       "93                                618?scRNA, PR_O60506             5  \n",
       "94                          100147744?snRNA, PR_Q969L4            11  \n",
       "95                               4566?tRNA, GO_0005737             1  \n",
       "96                            283131?ncRNA, GO_0010793             1  \n",
       "97                            26784?snoRNA, GO_0005515             1  \n",
       "98                            MIMAT0000062, GO_0030512          2349  \n",
       "99                         4878?RNAseP_RNA, GO_0008033             1  \n",
       "100                           MIMAT0019742, 56977?mRNA        214754  \n",
       "101                           MIMAT0000063, SO_0001373          1137  \n",
       "102                     100033413?snoRNA, MIMAT0000416          1400  \n",
       "103                         MSHSA414134, 643650?lncRNA          8283  \n",
       "104                                MIMAT0026554, WP100          7354  \n",
       "105               aptamer-details/?id=112, CHEBI_17191           219  \n",
       "106                           6774?circRNA, GO_0005737             1  \n",
       "107                       100009676?lncRNA, GO_0005634          2313  \n",
       "108                           MIMAT0000062, GO_0005634          3492  \n",
       "109                              10011?mRNA, PR_Q96T58           228  \n",
       "110                        100129503?others, PR_P52272            65  \n",
       "111                        MI0022712, 106480796?pseudo             1  \n",
       "112                       100009667?pseudo, GO_0005634           230  \n",
       "113                              618?scRNA, 10261?mRNA            23  \n",
       "114                       101954273?snRNA, 140710?mRNA           100  \n",
       "115                               4567?tRNA, 4535?mRNA             1  \n",
       "116                       100129195?lncRNA, GO_0005730            34  \n",
       "117                              MI0000288, GO_0010629             1  \n",
       "118                    7012?telomerase_RNA, GO_0005737             2  \n",
       "119                           283131?ncRNA, GO_1901647             1  \n",
       "120                           MIMAT0004924, 11122?mRNA        214754  \n",
       "121                     MIMAT0000062, 106480795?pseudo         59377  \n",
       "122                             100113378?snoRNA, 6628           367  \n",
       "123                      100009613?lncRNA, CHEBI_72564          1282  \n",
       "124                         MIMAT0000096, R-HSA-109581         10096  \n",
       "125                 aptamer-details/?id=104, PR_Q96JM3           117  \n",
       "126                       100033425?circRNA, PR_Q15717          1105  \n",
       "127                    100505648?lncRNA, 677780?scaRNA            11  \n",
       "128                          MIMAT0000077, 26824?snRNA            19  \n",
       "129                       152137?mRNA, 106479257?ncRNA             7  \n",
       "130                            100129503?others, H2AFZ           263  \n",
       "131                               MI0000069, PR_P24864            27  \n",
       "132                        100037280?pseudo, PR_P22087          1903  \n",
       "133                          6029?scRNA, MONDO_0007254             3  \n",
       "134                            26826?snRNA, GO_1990742             1  \n",
       "135                CHR1.TRNA134-GLUTTC.html, 6132?mRNA             3  \n",
       "136                          283131?lncRNA, GO_0010793             1  \n",
       "137                      6023?RNAseMRP_RNA, GO_0005739             1  \n",
       "138                         100008587?rRNA, GO_0003735            22  \n",
       "139                    7012?telomerase_RNA, GO_0000333             3  \n",
       "140                       MIMAT0000062, 100037417?mRNA        214754  \n",
       "141                               MI0000063, 1021?mRNA           116  \n",
       "142                 tRNA-Leu-CAA-1-1.html, CHEBI_25017           549  \n",
       "143                          10000?circRNA, HP_0006770          1061  \n",
       "144                           MIMAT0000271, GO_0036498         41349  \n",
       "145                             DB14582, MONDO_0017132             6  \n",
       "146                       100048912?circRNA, PR_O00541             2  \n",
       "147                        100287366?lncRNA, 4549?rRNA            18  \n",
       "148                            MIMAT0000430, 618?scRNA             1  \n",
       "149                            10006?mRNA, 402117?mRNA          7035  \n",
       "150                                  7012?others, 6694             2  \n",
       "151                          MI0000060, 100529063?mRNA           223  \n",
       "152                          100034743?pseudo, H3K27ac           460  \n",
       "153                        107397391?scaRNA, PR_O15350           429  \n",
       "154                     124904613?snRNA, MONDO_0004975            15  \n",
       "155                           4511?tRNA, 647979?lncRNA             9  \n",
       "156                           283131?ncRNA, GO_0042382             1  \n",
       "157                       100033422?snoRNA, GO_0005730           709  \n",
       "158                           MIMAT0000062, GO_1903231           535  \n",
       "159                        4878?RNAseP_RNA, GO_0004526             1  \n",
       "160                               rs2515847, PR_Q9H3D4        515845  \n",
       "161                                   MIMAT0000062, 86         92582  \n",
       "162                      tRNA-Ala-AGC-11-1.html, m2G10          1366  \n",
       "163                    100009676?lncRNA, MONDO_0002656         29984  \n",
       "164                           MIMAT0000454, GO_0004519          3400  \n",
       "165                               1117.html, 1454?mRNA            40  \n",
       "166                           10000?circRNA, MI0000490        125504  \n",
       "167                   109729173?lncRNA, 85495?ribozyme             1  \n",
       "168                        MIMAT0000073, 677778?scaRNA            10  \n",
       "169                              100133204?mRNA, H2AFZ           486  \n",
       "170                         100130418?ncRNA, PR_O75030           716  \n",
       "171                                   MI0000060, H2AFZ         20754  \n",
       "172                   100873311?pseudo, 100169761?rRNA             5  \n",
       "173                          677768?scaRNA, GO_0005634             1  \n",
       "174                     100033414?snoRNA, MIMAT0001581             8  \n",
       "175                            trfdb?1005, 9906?pseudo            26  \n",
       "176                100048912?antisense_RNA, GO_0031507             1  \n",
       "177                              MI0006383, GO_0005730             8  \n",
       "178                        100129195?ncRNA, GO_0005730            34  \n",
       "179                        101447996?snRNA, GO_0005685             1  \n",
       "180                               rs1428747, PR_P56693        515844  \n",
       "181                                   MIMAT0000062, 12        349315  \n",
       "182                            trfdb?1001, CLO_0001088           905  \n",
       "183                              100048912?lncRNA, 142          1051  \n",
       "184                              MI0000105, GO_0007155          1716  \n",
       "185                               1103.html, 8125?mRNA            77  \n",
       "186                        10000?circRNA, MIMAT0000269        321108  \n",
       "187                        100009676?lncRNA, PR_O00425          6087  \n",
       "188                       MIMAT0000421, 85495?ribozyme             1  \n",
       "189                                 10011?mRNA, 283120            11  \n",
       "190                        100048912?ncRNA, GO_0005634           107  \n",
       "191                              MI0000063, GO_0070062            25  \n",
       "192                 100009667?pseudo, 100009667?pseudo            86  \n",
       "193                           677679?scaRNA, PR_Q9Y6M1            35  \n",
       "194                        100033413?snoRNA, PR_P03372         11932  \n",
       "195                             trfdb?1001, 10263?mRNA         26315  \n",
       "196                          283131?lncRNA, GO_0042382             1  \n",
       "197                         100008587?rRNA, GO_0005840            22  \n",
       "198                         family/RF02275, GO_0003824             4  \n",
       "199                    7012?telomerase_RNA, GO_0007004             3  \n",
       "200                             rs111947526, PR_O14978        515845  \n",
       "201                                   MIMAT0000062, 86        150774  \n",
       "202         tRF-30-PNR8YP9LON4V, tRNA-Gly-CCC-1-1.html        113819  \n",
       "203                     100033414?snoRNA, 60674?lncRNA           141  \n",
       "204                               MI0000060, PR_O75030          1851  \n",
       "205                                 DB14582, 7276?mRNA             4  \n",
       "206                         family/RF00011, GO_0030680             2  \n",
       "207                 100038246?lncRNA, 100421137?pseudo          2577  \n",
       "208                     MIMAT0000062, 100128011?pseudo          1894  \n",
       "209                         100008586?mRNA, GO_1990742         14116  \n",
       "210                         100130418?ncRNA, PR_Q92804            47  \n",
       "211                           piR-hsa-39980, 6241?mRNA             1  \n",
       "212                        100034743?pseudo, PR_P24928            54  \n",
       "213                       100158262?scaRNA, SO_0001327            21  \n",
       "214                       100033413?snoRNA, GO_1990742           763  \n",
       "215                          trfdb?3008a, 11147?lncRNA            18  \n",
       "216                        100048912?ncRNA, GO_0031507           109  \n",
       "217                           MIMAT0000066, GO_0070104            45  \n",
       "218                           378706?scRNA, GO_0005786             3  \n",
       "219                      6023?RNAseMRP_RNA, GO_0000172             2  \n",
       "220                              rs11991390, PR_Q99856        515845  \n",
       "221                                   MIMAT0000062, 12        350000  \n",
       "222                  trfdb?1001, tRNA-Ser-TGA-1-1.html           985  \n",
       "223                       677817?snoRNA, 677776?scaRNA            36  \n",
       "224                               MI0000060, PR_O00470          1752  \n",
       "225                                 DB16699, PR_P02768             1  \n",
       "226                         family/RF00011, GO_0004526             5  \n",
       "227                            1000?lncRNA, GO_0006915            99  \n",
       "228                            MIMAT0000444, PR_P26358           105  \n",
       "229                           1000?mRNA, MONDO_0007256           513  \n",
       "230                         100132403?ncRNA, PR_P24928            12  \n",
       "231                       piR-hsa-20280, 407975?lncRNA             1  \n",
       "232                        100009667?pseudo, 5460?mRNA          1173  \n",
       "233                          100169751?rRNA, PR_O43474           713  \n",
       "234                        100033413?snoRNA, PR_Q9Y6M1           751  \n",
       "235                             23766?TEC, CHEBI_72564             2  \n",
       "236                100048912?antisense_RNA, GO_0005515             1  \n",
       "237                          piR-hsa-43176, GO_0006396             1  \n",
       "238                        101447996?snRNA, GO_0000395             1  \n",
       "239                           MIMAT0000089, GO_0016442             2  \n",
       "240                                rs10046, HP_0003002          1407  \n",
       "241                                   MIMAT0000062, 52        496707  \n",
       "242                    tsRNA-Ala-1-0001, MONDO_0000553         26602  \n",
       "243                 100036565?snoRNA, 100420364?pseudo             9  \n",
       "244                               MI0000060, PR_O43763          1633  \n",
       "245                              DB05487, PR_000007204            11  \n",
       "246                         129642?circRNA, GO_0072562             6  \n",
       "247                  100506305?lncRNA, 100133121?ncRNA             7  \n",
       "248                           MIMAT0000062, GO_0006914           792  \n",
       "249                        100505576?mRNA, CHEBI_72564            97  \n",
       "250                           100132403?ncRNA, H3K27ac           130  \n",
       "251                               27250, 282997?lncRNA            12  \n",
       "252                    100033407?pseudo, MONDO_0005036           405  \n",
       "253                              4549?rRNA, GO_0005739             3  \n",
       "254                        100113382?snoRNA, PR_P04075             4  \n",
       "255                          109136578?sRNA, PR_O15350            74  \n",
       "256                             6084?Y_RNA, GO_1990742             4  \n",
       "257                       100048912?lncRNA, GO_0031507           105  \n",
       "258                    7012?telomerase_RNA, GO_0000332             6  \n",
       "259                              MI0000060, GO_0016442           383  \n",
       "260                                 rs71571091, 148753        357873  \n",
       "261                              MI0000776, GO_0006382             4  \n",
       "262                     MIMAT0016916, tsRNA-Leu-i-0438        135518  \n",
       "263                       767561?snoRNA, 6029?misc_RNA             2  \n",
       "264                       100128893?lncRNA, GO_0030154            32  \n",
       "265                             DB05528, MONDO_0018328            14  \n",
       "266                        NC_040729.1, family/RF02682          5896  \n",
       "267                 100009676?lncRNA, 109729173?lncRNA          3187  \n",
       "268                     MIMAT0000243, 106479431?others            14  \n",
       "269                            10011?mRNA, CLO_0003684            75  \n",
       "270                             4512?mtRNA, GO_0005634            19  \n",
       "271                        339476?others, MIMAT0001581             1  \n",
       "272                      100129291?pseudo, CHEBI_72564            85  \n",
       "273                          109910381?rRNA, 4549?rRNA             4  \n",
       "274                            1050?snoRNA, GO_0006915             1  \n",
       "275                    6066?snRNA, 43740578?viral_mRNA             1  \n",
       "276                            56664?vtRNAs, PR_P23246             1  \n",
       "277                           378706?scRNA, GO_0006617             3  \n",
       "278                           MIMAT0000062, GO_0090051           423  \n",
       "279                      6023?RNAseMRP_RNA, GO_0001172             4  \n",
       "280                            rs1000378392, MI0017867         11200  \n",
       "281                               MI0000080, MI0000231           136  \n",
       "282                           MI0000060, 283120?lncRNA          3649  \n",
       "283           100113393?snoRNA, 441951?retained_intron            31  \n",
       "284                       100124700?lncRNA, PW_0000007            58  \n",
       "285                                  DB05528, 338?mRNA             7  \n",
       "286                         family/RF00011, GO_0008033             3  \n",
       "287                          100009613?lncRNA, H3K27ac         51375  \n",
       "288                      MIMAT0000103, 100533955?ncRNA            14  \n",
       "289                              3458?mRNA, CL_0000558             3  \n",
       "290            6047?mRNA, 3'-mivaRNAII-138?viral_nsRNA             2  \n",
       "291                        100126299?others, PR_O43474         11851  \n",
       "292                            PR_O43251, MIMAT0015217            21  \n",
       "293                          100169751?rRNA, PR_Q86U44            30  \n",
       "294                          319103?snoRNA, SO_0001298             6  \n",
       "295                         125050?snRNA, MIMAT0001581             2  \n",
       "296                             56662?vRNA, GO_0005634             6  \n",
       "297                          piR-hsa-43176, GO_0005730             1  \n",
       "298                        101447996?snRNA, GO_0030627             1  \n",
       "299                           MIMAT0000083, GO_0051607             1  \n",
       "300                         rs10001106, piR-hsa-146385         12838  \n",
       "301                              rs10106, MIMAT0004952           101  \n",
       "302                            MI0000060, MIMAT0000062          2879  \n",
       "303                     MIMAT0000062, 100048912?lncRNA         14855  \n",
       "304                          6082?snoRNA, TRNA-PRO-CCG             7  \n",
       "305                           10001?lncRNA, GO_0005634         26682  \n",
       "306                             119X/E20X+2, 6323?mRNA          2678  \n",
       "307                          XIK9D1LR.html, GO_0006428         13072  \n",
       "308                      100128285?lncRNA, CLO_0001601            52  \n",
       "309                         MIMAT0000065, MIMAT0000441             4  \n",
       "310  MIMAT0000434, 3'NTR(NC_003899.1)?viral_unassig...             1  \n",
       "311                           10000?mRNA, MIMAT0001581         17923  \n",
       "312                           28738?others, GO_0005829             3  \n",
       "313                           PR_000050224, GO_0070062         20070  \n",
       "314                      106481202?ribozyme, PR_O43474            94  \n",
       "315                    100033806?snoRNA, MONDO_0000820            21  \n",
       "316                         100147744?snRNA, PR_O15350         24489  \n",
       "317                        55199?unknown, MIMAT0001581             3  \n",
       "318                       100048912?lncRNA, GO_0005515            27  \n",
       "319                              MI0000060, GO_0035195           563  \n",
       "320                    7012?telomerase_RNA, GO_0003720             3  \n",
       "321                       piR-hsa-10123, MONDO_0004986           275  "
      ]
     },
     "execution_count": 13,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# read in relation data\n",
    "relation_data = open('./resources/relations_data/RELATIONS_LABELS.txt').readlines()\n",
    "relation_dict = {x.split('\\t')[0]: x.split('\\t')[1].strip('\\n') for x in relation_data}\n",
    "\n",
    "# function to return key for any value\n",
    "def get_key(my_dict, val):\n",
    "    for key, value in my_dict.items():\n",
    "        if val == key:\n",
    "            return value + ' (' + key + ')'\n",
    " \n",
    "    return \"key doesn't exist\"\n",
    "\n",
    "# print basic stats on each resource\n",
    "edge_data = [[key,\n",
    "              get_key(relation_dict, master_edges[key]['edge_relation']),\n",
    "              ', '.join(master_edges[key]['edge_list'][0]),\n",
    "              len(master_edges[key]['edge_list'])]\n",
    "             for key in master_edges.keys()]\n",
    "\n",
    "# convert dict to pandas df for nice printing\n",
    "df = pandas.DataFrame(edge_data, columns = ['Edge Type', 'Relation', 'Example Edge', 'Unique Edges']) \n",
    "df['Edge Type'] = df['Edge Type'].str.replace(r'\\d+$', '', regex=True) \n",
    "df['Edge Type'] = df['Edge Type'].str.replace('HOM', '')\n",
    "pandas.set_option('display.max_rows', None)\n",
    "df                "
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "id": "J4_qSjxjRYRe"
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   "source": [
    "<br><br>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "id": "4o-N6yPsRYRe"
   },
   "source": [
    "***\n",
    "\n",
    "## Build Knowledge Graph  <a class=\"anchor\" id=\"build-kg\"></a>\n",
    "**Wiki Pages:**  \n",
    "- **[`KG-Construction`](https://github.com/callahantiff/PheKnowLator/wiki/KG-Construction)**  \n",
    "- **[`relations-data`](https://github.com/callahantiff/PheKnowLator/wiki/Dependencies#relations-data)**  \n",
    "- **[`node-metadata`](https://github.com/callahantiff/PheKnowLator/wiki/Dependencies#node-metadata)** \n",
    "\n",
    "**Jupyter Notebooks:**  \n",
    "- [`RNA-KG_Preparation.ipynb`](https://github.com/emanuelecavalleri/testRNA-KG/blob/master/notebooks/RNA-KG_Preparation.ipynb)  \n",
    "- [`inteRNA-KG_Preparation.ipynb`](https://github.com/AnacletoLAB/RNA-KG/blob/main/notebooks/inteRNA-KG_Preparation.ipynb)\n",
    "- [`non-ontological_RNAentities.ipynb`](https://github.com/AnacletoLAB/RNA-KG/blob/main/notebooks/non-ontological_RNAentities.ipynb)\n",
    "- [`Ontology_Cleaning.ipynb`](https://github.com/callahantiff/PheKnowLator/blob/master/notebooks/Ontology_Cleaning.ipynb)\n",
    "\n",
    "\n",
    "<br>\n",
    "\n",
    "**Assumptions:**  \n",
    "- <u>Construction Approach</u>. If using the `subclass-based` construction approach, please make sure that a `pickled` dictionary mapping each non-ontology data node to an existing ontology class is created and added to the `./resources/knowledge_graph` directory (please see [here](https://github.com/callahantiff/PheKnowLator/tree/master/resources/knowledge_graphs#construction-method) for additional information).   \n",
    "- <u>Relations Data</u>. If inverse relation data is going to be used to build the knowledge graph, that it has been generated and added to the `./resources/relations_data` directory (please see [here](https://github.com/callahantiff/PheKnowLator/blob/master/resources/relations_data/README.md) for additional information).  \n",
    "- <u>Decoding OWL Semantics</u>. If decoding OWL-Semantics, please make sure to provide a list of owl:Property types to keep is created and added to the `./resources/knowledge_graph` directory (please see [here](https://github.com/callahantiff/PheKnowLator/wiki/OWL-NETS-2.0) for additional information). \n",
    "\n",
    "<br>\n",
    "\n",
    "**Input:** \n",
    "- `Master_Edge_List_Dict.json`  \n",
    "- Directory of relations data sources - see [here](https://github.com/callahantiff/PheKnowLator/wiki/Dependencies#relations-data) for more information\n",
    "\n",
    "<br>\n",
    "\n",
    "**Output:** Please see [`Release v2.0.0 Wiki`](https://github.com/callahantiff/PheKnowLator/wiki/v2.0.0) for access to all generated output files.   \n",
    "- `Knowledge Graph` (`.owl` and Networkx MultiDiGraph `.pkl`)  \n",
    "- `Class Instance URI-UUID Map` (if \"instance\" construction approach)   \n",
    "- `Triple List - Integer`  \n",
    "- `Triple List - Identifier`  \n",
    "- `Node Integer-Identifier Map`\n",
    "\n",
    "<br>\n",
    "\n",
    "The process to build the knowledge graph is somewhat time consuming and can be broken into the following steps:  \n",
    "\n",
    "1. Merge Ontologies. See [here](https://github.com/callahantiff/PheKnowLator/blob/master/resources/ontologies/README.md) for additional information on how to preprocess the ontologies prior to merging them.    \n",
    "\n",
    "2. Create Edges. Add edge lists to merged ontologies.  \n",
    "\n",
    "3. Add Inverse Relations and Node Data. See the [Dependencies](https://github.com/callahantiff/PheKnowLator/wiki/Dependencies) Wiki page for details on how to construct these resources.  \n",
    "\n",
    "4. Filter OWL Semantics. Filter the knowledge graph with the goal of removing all edges that contain entities that are needed to support owl semantics, but are not biologically meaningful (please see [here](https://github.com/callahantiff/PheKnowLator/wiki/OWL-NETS-2.0) for additional information). \n",
    "\n",
    "<br>\n",
    "\n",
    "**‼ IMPORTANT:**  \n",
    "- The file containing the merged ontologies is quite large and can take up to 10 minutes to read in.  This is not a limitation of the code directly, but rather a function of the [`RDFLib Library`](https://github.com/RDFLib). While there are other ways to read in this data, we maintain reliance on this library as it is the most user-friendly for non-RDF users.\n",
    "\n",
    "***\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "id": "pfqF4Y3KRYRh"
   },
   "outputs": [],
   "source": [
    "# specify input arguments\n",
    "build = 'full'\n",
    "construction_approach = 'instance'\n",
    "add_node_data_to_kg = 'no'\n",
    "add_inverse_relations_to_kg = 'yes'\n",
    "decode_owl_semantics = 'yes'\n",
    "kg_directory_location = './resources/knowledge_graphs'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "id": "oRrIyi22RYRh",
    "outputId": "dcccf5e7-c73d-4717-ad2b-5dc4e6c7d827",
    "scrolled": true
   },
   "outputs": [],
   "source": [
    "# construct knowledge graphs\n",
    "if build == 'partial':\n",
    "    kg = PartialBuild(construction=construction_approach,\n",
    "                      node_data=add_node_data_to_kg,\n",
    "                      inverse_relations=add_inverse_relations_to_kg,\n",
    "                      decode_owl=decode_owl_semantics,\n",
    "                      cpus=cpus,\n",
    "                      write_location=kg_directory_location)\n",
    "elif build == 'post-closure':\n",
    "    kg = PostClosureBuild(construction=construction_approach,\n",
    "                          node_data=add_node_data_to_kg,\n",
    "                          inverse_relations=add_inverse_relations_to_kg,\n",
    "                          decode_owl=decode_owl_semantics,\n",
    "                          cpus=cpus,\n",
    "                          write_location=kg_directory_location)\n",
    "else:\n",
    "    kg = FullBuild(construction=construction_approach,\n",
    "                   node_data=add_node_data_to_kg,\n",
    "                   inverse_relations=add_inverse_relations_to_kg,\n",
    "                   decode_owl=decode_owl_semantics,\n",
    "                   cpus=cpus,\n",
    "                   write_location=kg_directory_location)\n",
    "\n",
    "kg.construct_knowledge_graph()\n",
    "ray.shutdown()"
   ]
  }
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